Agarivorans sediminis: M0C34_12885
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Entry
M0C34_12885 CDS
T08089
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
agz
Agarivorans sediminis
Pathway
agz03030
DNA replication
agz03430
Mismatch repair
agz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
agz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M0C34_12885 (dnaE)
03430 Mismatch repair
M0C34_12885 (dnaE)
03440 Homologous recombination
M0C34_12885 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
agz03032
]
M0C34_12885 (dnaE)
03400 DNA repair and recombination proteins [BR:
agz03400
]
M0C34_12885 (dnaE)
Enzymes [BR:
agz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
M0C34_12885 (dnaE)
DNA replication proteins [BR:
agz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
M0C34_12885 (dnaE)
DNA repair and recombination proteins [BR:
agz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
M0C34_12885 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
UPW17135
LinkDB
All DBs
Position
complement(2842749..2846174)
Genome browser
AA seq
1141 aa
AA seq
DB search
MIDGLKKVKPIIAKAAELNMPAIALTDQTNFCGLVKFYGEAHNRGIKPIIGCDFFVKSEE
FADDHFRLTLLAVDNQGYQNITMLISRAYLRGQLQGRPVIDKQWLSEHAEGVIVLSGARH
GDVGKALLKGNAVLVERCLRFYQQYFADNYFLELIRTGRPDEENYLHMAVELAAQQQLPV
VATNEVVFLEEDQFQPHEVRVAIHDGFGMDDNRRPKKYSAQQYLRSEQEMQNLFADIPEA
LQNSVEIAKRCNVTVRLGEYFLPDFPTDGLPIEEFFCKVSWDGLEERLEFLFPDPEERAK
RRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNNIPVGPGRGSGAGSLVAYAQKI
TDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAELYGRDAVSQIITFGTM
AAKAVVRDVGRVLGQPYGFVDRISKLIPPDPGMTLEKAFEAEPRLPELYDSDQEVRELID
MARILEGVTRNAGKHAGGVVISPTTITDFAPLYCDAEGKNPVTQFDKNDVEYAGLVKFDF
LGLRTLTIIQWALDMLNPVLAAKGEPPVDIAAISTTDQKSFRLLQDCKTTAVFQLESRGM
KDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGREAVSYPDEKWQHDSLQPI
LEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRAVFEEGAIKNNV
DGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWMKTHYPAYFMAAVMSADMDNTDK
IVTLVDECSNMKLKLVPPDVNAGLFKFSVNSDEEIVYGIGAIKGVGEGPIDAILAARKSG
PFIDLFDFCCRLDLKKINRRVIEKLIMAGAMDKLGPHRAALMATLPSAMQAASQQAQASA
RGQEDLFGVLSVEDDTRPSFVEQDKWTEKVWLEGEKETLGLYLTGHPVNRYLKEFRHYTT
GRLVDIRPTGRDTTSTVAGLVLSTRVMMTKRGAKMGIIQLDDRSARLDIMFFSEAFDTYQ
ELLEKDRMLVIQGQVSVDDFSGGIKMTAREVMDLSTARERWLKKLRLNMCRDQLDELFWQ
RFYKVIEPYRAGTCPVTISYEGDHASGMLSLGTDWRITPSEDLIEALTQLLGQQQVTLEF
N
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgatcgatggtctgaagaaagttaaacctattattgccaaagccgcagagctgaatatg
cctgctattgctctcaccgatcagactaacttttgtggtttagtaaagttttatggcgaa
gcgcataaccgaggtataaaaccgattattggctgtgacttcttcgtcaagtctgaagag
tttgctgatgaccactttcgtttaaccctgttagccgttgataatcaaggctatcaaaat
ataactatgctgatatcacgcgcatacttacggggccagctgcaaggtagaccggttatt
gataagcagtggttaagcgaacatgccgaaggggtgatcgtattatccggcgcgcgccat
ggtgatgtaggtaaagctttactcaagggaaatgcagtattagttgaacgctgcctacgc
ttttatcaacagtatttcgccgataattattttttggaattgatacgcaccggtcgccct
gacgaagaaaattatttacatatggcagttgaactagctgctcagcaacaactccctgtt
gtcgcgactaatgaagtcgtctttttggaagaagaccaatttcaacctcatgaagtgaga
gtggctattcatgatggttttggcatggatgacaatcgcaggcctaaaaaatatagtgct
cagcaatacttacgtagcgaacaagaaatgcagaacttgtttgcagatatccctgaagcg
ttacaaaactcagtagaaattgccaagcggtgtaatgttaccgttcgcttgggagaatac
ttcttacccgacttccccacagatgggctgccaattgaagagtttttttgtaaggtatcc
tgggatggcctagaagagcgtttggagtttctatttcctgatcccgaagagcgcgcgaag
cgacgacctgaatatgatgaacgtctacaaattgagctagatgttatcaaccaaatgggg
ttccctgggtacttcctgatcgtaatggaatttattcagtggagtaaagataataatatt
ccggtggggcccggtcgcggctcgggtgcagggtcgttggtggcgtatgcacaaaaaatt
acagacctcgatccgcttgaatacgacttactgtttgaacgctttttgaaccccgagcgg
gtttccatgcccgatttcgacgtcgacttttgcatggatcgccgagacgaggtgattgac
cacgtcgcagagctgtatggtcgcgatgcggtatcacaaatcatcacttttggtaccatg
gccgctaaagcggtggttcgggatgtgggtagggtgcttgggcagccttatggttttgtt
gaccgtatatcaaaattgatccctcctgatccaggcatgaccttggaaaaagcctttgag
gccgaaccgcgattacctgagctttacgatagtgatcaagaagttcgcgaactgatcgat
atggctaggatacttgaaggggttacccgtaatgcaggtaaacacgcgggaggggtggtt
atatcgcccactactattactgactttgcccccttgtattgtgatgcagagggtaaaaac
cctgttactcagtttgataaaaatgatgtggagtacgccggtcttgttaagttcgacttc
cttggcttacgtaccttaaccattatccaatgggcactggatatgttaaatccggtgctt
gcggccaaaggtgaaccgccggttgatattgcggctatttcaaccaccgatcaaaaatct
ttcaggctattacaagattgtaaaaccaccgctgtattccagctggaatcgcgcggcatg
aaagatctgatcaagcggcttaagccagattgttttgaagacatgattgcattagttgct
ttgttccgtccaggtcctttgcaatcaggtatggtagataactttattgaacgtaagcac
ggccgcgaggcggtgtcttacccagatgaaaaatggcaacacgatagcctacagcctatt
cttgaacctacttacgggatcattctgtatcaagagcaagtgatgcaaattgctcaggtc
ctagcgggttatactcttggcggtgcagacatgttacgccgcgcaatgggtaagaagaaa
cctgaagaaatggccaagcagcgtgcggtatttgaagaaggtgctatcaaaaataatgtc
gacggtgagttggctatgaagatttttgatttagttgaaaagtttgcaggctacggtttt
aacaaatcccactcagccgcctatgcattagtatcttatcaaacgctgtggatgaagact
cattaccctgcgtactttatggctgcggtaatgtctgccgatatggataacaccgataag
attgttaccttggttgacgaatgtagcaacatgaagttgaagcttgttccgcctgatgtt
aacgcaggtttgttcaagttctcggtgaattctgatgaagaaattgtttacggtattggt
gccatcaaaggcgtcggagaggggcctattgacgctattttagcggcaagaaaatctggc
ccatttatcgatttgtttgatttttgctgtcgtttagatcttaaaaaaatcaatcgccga
gtgatcgaaaagctcatcatggctggcgctatggataagttggggcctcaccgagctgca
ctgatggctactttaccttcagccatgcaagcagcctctcagcaggctcaagcttcggct
cgtgggcaagaagacttatttggcgtattgtcagtagaggatgacactcggccaagtttt
gttgaacaagacaaatggactgaaaaagtctggctagagggagagaaagaaacgctaggc
ctatatttaacgggtcacccagtaaaccgctatttaaaagagtttcgtcattatacaacg
ggccgcttagtagatattcgcccaactggtcgggacactacctctaccgtagctggttta
gtattgtctacccgcgtaatgatgactaagcggggtgctaagatgggtattatccaattg
gatgatagaagtgcccgtctagatatcatgttttttagtgaagcctttgatacttaccaa
gaactacttgaaaaagatcgcatgttggtcattcaagggcaggtcagcgttgatgatttc
tctggaggcattaaaatgactgctcgagaggttatggacttatcgacagcgcgtgaacgt
tggttaaagaagctacgcttgaatatgtgtcgagaccagcttgacgaattattttggcaa
cgattttataaggttatagagccatatcgtgccggtacctgtccagtgacgataagttat
gaaggcgatcatgccagtggcatgttaagcttaggtacagattggcgaattacgccaagt
gaagatttaatagaggcgttgacccaattgttgggacaacagcaagtcaccctagaattt
aattaa
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