Agarivorans sp. TSD2052: M0C34_16460
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Entry
M0C34_16460 CDS
T08089
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
agz
Agarivorans sp. TSD2052
Pathway
agz03410
Base excision repair
agz03430
Mismatch repair
agz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
agz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
M0C34_16460 (recJ)
03430 Mismatch repair
M0C34_16460 (recJ)
03440 Homologous recombination
M0C34_16460 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agz03400
]
M0C34_16460 (recJ)
DNA repair and recombination proteins [BR:
agz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
M0C34_16460 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
M0C34_16460 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M0C34_16460 (recJ)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
UPW17810
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All DBs
Position
complement(3627614..3629335)
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AA seq
573 aa
AA seq
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MLLRRRDNFDTQSLPAEWPELIKQVYVRRGVKTAADVERRAQALLPFQGLQGMDDAVNLL
IDNLQTRKKIVIVGDFDADGATSTAVLMAGLPQFGFRGVGFLVPNRFEYGYGLSPEIVEL
AAAKGAELIITVDNGISSLSGVDKAQSLGIPVLITDHHLPGEQLPKAAAIVNPNLSACAF
PSKNLAGVGVAFYLLMALRSKMRQQDLFAKQGLLEPNIASLLDLVALGTVADVVPLDSNN
RILVHQGIQRIRAGACRPGIQALIEVSGRNKANMVASDLGFAIGPRLNAVGRLDDMSLGI
HCLLSDDIHHARQLASEMDSLNSERKDIEQSMQQEAQVSVSQLSLDAESLPKALCLYQAD
WHQGVVGLVASRIKEQHYRPVFAFADGDNGEVKGSGRSVAGVHLRDLLERIDTQHPGLIS
KFGGHAMAAGLSLPQSRFAEFKACLEETAKSFIDEDCLTHTLLSDGELLPEQLVLAFAEM
LRESGPWGQGFPEPLFDGYFELCSQRVVGEKHLKMSVKLPGMNNEIDAIAFNVDRNIWPN
ASLKQVQLVYKLDVNEFRGRRSVQLMVEHLAPA
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
gtgttattacgccgccgagacaatttcgatacccaatcactgcccgctgagtggccagaa
ctgattaaacaagtgtatgtgcgtcgcggcgtaaaaacagccgccgacgttgagcgccga
gcccaagccttgctgccgtttcaaggcttacagggtatggatgatgccgttaatctactt
attgataatttacagacaagaaaaaaaatagttattgttggtgacttcgatgccgacggt
gccaccagtaccgcggtgttaatggcaggcttgccgcagtttggttttcgcggcgtaggt
tttttagtgcccaaccgttttgaatatggctatggcttaagccccgaaattgtcgagcta
gctgccgccaagggagcagagctaattatcactgtcgataatggtatctcgagtttatct
ggggttgataaagcgcaatcactgggtattccagtgttaattaccgatcaccatttaccc
ggtgaacagttgcccaaagctgcagccattgttaaccccaatttatctgcttgtgctttt
cctagcaaaaaccttgcaggggtaggggtggcattttatctgttaatggctttacgcagt
aaaatgcgtcagcaagacttatttgccaaacaaggcttgctagagcctaatattgccagt
ttattggatcttgtggccctcggtacggttgcagatgtggtgccgctagacagcaataat
cgcatcttggtgcatcaaggaatacagcggattagagcgggggcctgtcggcctggcatt
caagcattaatcgaagtatcgggcagaaataaagccaatatggtggccagtgatttaggt
tttgctattggcccacgcttaaatgcagtagggcggctagatgacatgagcttagggatc
cactgtttactgagtgatgacatccatcacgcccgtcaattggccagtgaaatggatagt
ttaaacagtgagcgtaaagacatagaacaaagcatgcagcaagaagcgcaagtcagtgtt
agtcagctgagcctagatgctgaaagcttgcctaaggcgctgtgtttgtatcaagctgac
tggcatcaaggcgtagtggggttggtggcttctcgaatcaaggagcagcattatcggccg
gtattcgcctttgccgatggtgataatggcgaagtgaagggctctggtcgttccgtggcg
ggggtgcatctgcgagatttattagagcggatagatactcaacacccaggcttaattagc
aaatttggaggccatgccatggctgcgggcttatcactaccccagtcgcgttttgccgag
tttaaagcgtgtttggaagaaaccgccaaaagcttcatagatgaagactgcctgactcat
actttactgagtgacggtgaattactccctgagcaattggtcttagcctttgccgaaatg
ctacgcgaatcagggccgtggggacagggttttccagaacccttgtttgatggttatttt
gagctgtgtagccagcgagtggtaggcgaaaagcatttaaagatgagcgttaaattacca
ggcatgaataatgaaattgatgccattgcctttaatgttgaccgcaatatttggcccaac
gctagcttaaaacaggtgcagctagtgtataagttagatgtgaatgagtttagaggtcgc
cgcagtgtgcagctaatggtagagcatttagcccctgcgtaa
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