Agarivorans sp. TSD2052: M0C34_16960
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Entry
M0C34_16960 CDS
T08089
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
agz
Agarivorans sp. TSD2052
Pathway
agz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M0C34_16960 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agz03019
]
M0C34_16960 (rnr)
03016 Transfer RNA biogenesis [BR:
agz03016
]
M0C34_16960 (rnr)
Enzymes [BR:
agz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
M0C34_16960 (rnr)
Messenger RNA biogenesis [BR:
agz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M0C34_16960 (rnr)
Transfer RNA biogenesis [BR:
agz03016
]
Prokaryotic type
tRNA degradation factors
M0C34_16960 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
Motif
Other DBs
NCBI-ProteinID:
UPW17907
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All DBs
Position
complement(3728691..3731231)
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AA seq
846 aa
AA seq
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MQNQAVSATLKSTLLAALNEEMAPVSKDWLHALCSPEESAQFGATLAHLLEEGLLVTTRI
GAFTLPERLGLVTGTIIGHRDGFGFLKTTQEGSDLFLPAKEMRKVFHNDFVLAAPSSMDK
RGRREGQIVKLLKQRKVELVGRFFVEGNHRYVVPDDSRINQDILIAKSDTAGARQGQVVV
VEVISRPSAPKLAVGKVIDILGEKMAPGMEVQVALRNHDIPHEWPKAVSKSVSKLEEEVD
EAAKQQRVDLRALPLVTIDGEDARDFDDAVYCEAKKSGGWRLWVAIADVSYYVRPDSALD
REALLRGNSVYFPDQVIPMLPEQLSNGLCSLNPQVDRLCMVAEMTISAAGRLSGYKFYEA
VMHSHARFTYNKVAAILEGDEALIERYAQQVPHLEELHRLYSALKVSRAQRGGIELETQE
TRFIFNAQRKIEQIVPLTRNDAHKMIEECMIQANVAAAKFVEKQQQAILYRVHDKPGKER
LTNFRGFLNELGLPLGGGDEPQPSDYFKLVADIQQRPDLELIQTMLLRSMMQAVYQPDNL
GHFGLALKSYAHFTSPIRRYPDLLLHRVIKYLVNKQDTEAAGNTISNKWTPTGGYSYSED
EMEKFGENCSMTERRADDATREVSDSLKCEYMLDHVGMVYSATIAAVTGFGFFARLDEFH
IDGLVHINSLRGDYYHYDAARQLLVGEKTAKRFRIGDAVMVKVASVNMADRKMEFILVNK
DGQEDEFDRPNRRAKPSNPPRGKRFAANREEDASGKPATAKKKPRHRDTKNKGKRRQPSA
VSETNKDSGTENKGGFSPWQQRDPKANKAKGNNESASPKRKKPKKKRKQRPGKQERSAAK
QQKNQS
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatcaggctgtgtcggccaccttaaaatcgaccctcttggctgctctcaatgaa
gagatggcgccggtgtctaaagattggttacacgctttgtgtagccctgaagaaagtgcg
caatttggggctaccttagctcacttacttgaagagggcctcttggtaaccacccgcatc
ggcgcgtttaccttaccagaacgactaggcttagtgacggggactattattggtcataga
gacggttttgggtttcttaaaaccactcaagaaggtagcgatttattcctacccgccaaa
gaaatgcgcaaggtcttccataatgattttgtgttggccgctccctcgagtatggataag
cgtggtcgtagagaaggacaaattgttaagctactgaaacagcgtaaagttgaattggta
gggcgcttttttgttgaaggtaaccaccgttatgtggtgcctgatgattcgcgtattaac
caagatattttaattgccaaaagtgatactgctggtgctcgtcaaggccaagtggtagtg
gttgaagtcattagccgaccctctgcgccgaaattggcggtgggtaaagttatcgatatt
cttggtgagaaaatggcgcctggcatggaagtgcaagtggcgctgcgtaatcatgatatt
ccccatgaatggccaaaggctgttagcaagtccgttagcaagcttgaagaagaagtcgac
gaagccgctaaacaacagcgagtagatttacgtgctcttccattggtgacgattgatggc
gaagatgcgcgagattttgatgacgcggtctactgtgaagctaaaaaatcgggaggctgg
cgcttatgggtcgccattgctgacgtgtcttactacgtcagacctgactctgcacttgat
agagaagccttgctgcgtggtaactcggtctattttcctgaccaagtcattccgatgttg
cctgaacagctatccaacggattgtgttcgctgaatccacaggttgatcgtttgtgcatg
gtggcagagatgaccatttccgctgcgggacgattatctggctataagttttatgaagca
gtgatgcactctcatgcgcgttttacttataacaaagtagctgcgattttagagggtgat
gaagccctaattgaacgttatgcccagcaagtgccgcatctagaagagctacaccgttta
tatagcgcattaaaagtgagtcgcgcgcaacgtggtggcatagagttggaaacccaagaa
acccgctttatttttaatgcacagcgaaaaattgagcaaattgttccgctgactcgtaat
gatgcacataagatgattgaagagtgcatgattcaagcaaacgtggcggcggcaaagttt
gttgagaagcagcaacaagccattttataccgggttcacgataaaccgggtaaagagcgt
ttaactaattttagaggctttttaaatgaacttggcctaccgctaggtggcggggacgaa
cctcaacctagtgattactttaaattggttgcagatatccaacagcgccctgatctagaa
cttattcaaacgatgttgctgcgctcgatgatgcaggctgtttatcagcccgataatctt
gggcattttggtctggcactaaaatcttatgcgcatttcacctcaccaattaggcgttat
cctgacttattgctgcatcgagtgatcaagtatttggtcaacaagcaagataccgaagcg
gctggtaacaccattagtaataagtggacccccactggcggatacagctactcagaagat
gagatggaaaagtttggcgaaaactgttcaatgaccgagcgacgtgccgatgacgccaca
cgagaagtgtcagatagtttgaaatgtgaatatatgctcgatcatgtggggatggtttat
tcagcgaccattgccgcggtaacgggttttggcttctttgcgcgtttagatgagttccat
atcgacggcttagtacacatcaattctttacgtggcgattattatcattatgatgcagca
cgccaattgttagtgggagagaaaaccgctaaacgttttcgcattggtgatgcggtaatg
gtgaaggtagcgtcagtcaatatggcggaccgaaaaatggaatttatcttggtcaacaaa
gacggccaagaagatgagtttgaccggccaaaccgcagggctaaacctagcaatcctcct
cgtggtaagcgttttgccgccaaccgagaagaagacgctagcgggaagccagcaacggcc
aagaaaaagccgcgccatcgcgataccaaaaataaaggtaaacgccgccaaccgagtgct
gttagtgagaccaataaagactctggcacagaaaataaagggggttttagcccttggcag
cagcgtgacccaaaagccaacaaagctaaaggcaataatgagtcggctagccctaagcgt
aaaaaaccgaaaaagaaacgtaagcaacgccctggtaaacaagagcgcagcgccgctaaa
caacagaagaatcaatcatga
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