Agarivorans sediminis: M0C34_17590
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Entry
M0C34_17590 CDS
T08089
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
agz
Agarivorans sediminis
Brite
KEGG Orthology (KO) [BR:
agz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
agz03021
]
M0C34_17590 (rapA)
Transcription machinery [BR:
agz03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
M0C34_17590 (rapA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
HH_YBHG
Cas3-like_C_2
Flavi_DEAD
AAA_34
Motif
Other DBs
NCBI-ProteinID:
UPW18021
LinkDB
All DBs
Position
3862093..3865011
Genome browser
AA seq
972 aa
AA seq
DB search
MSFSIGQRWISDSESELGLGTVVAIEGRMVTLLFPASGENRFYAMAEAPITRVVFNVGDD
ITSSDDWSMTITEVEETDELIVYHGVRHDNQDAVQLREMFLSHFLKFNKPQDRLFAGQVD
RFDSFVVRHQTQKKRFEQQQSDLKGLMGGKVSLIPHQLYIASEVGRRISPRVLLSDEVGL
GKTIEAGLIIHQQLIAGLAKRVLIVVPDALQYQWLIEMLRRFNMHFSLFDEDRCIEAYAE
SDNPFDTEQLVLCSLNFLRSRKKRFEQVLEADWDLMIVDEAHHLKWDEQSPSREYQIIEA
LAKQVAGVLLLTATPDQLGHQSHFARLRLLDPDRFYDYHAFIEEEKHYQPVATAAQSLLD
SAPLLPGQANQLTELLGENDIEPLLTIINDAASSYEQQQQAREELLQHLLDRHGTGRVLF
RNTRSAMQGFPLRHLSSYPLTLPSQYQTALKVHQMMQGSSSKDVMQLMFPEELYQQFEGE
VEGEASWSKFDPRIDWLVGFLLAHKQKKILLICAKAATALAIEDAVRTREGIRATVFHED
MSLLERDKAAAYFAQDEAGAQLMVCSEIGSEGRNFQFAHHIVLFDLPINPDLLEQRIGRL
DRIGQQNDIEIHVPYLTDTPQETLLRWYHEGLNAFEQTCPAGSEIYAEFGERLNGLLVQT
NPEQEQLNQLIAECSKRYHVVKQKLDAGRDRLLEIHSGGGSKATELVEKIQAAEQDPHFV
TFSLRLFDTIGINQDDKGENALVLHASEQMLVPTIQGLPEDGCTITYDRETALSRDEIQL
MSWEHPLLQSCIDTILSADLGTTSVALLKNRALPVGSLFLEGMFIVETSAPAQYQIERYL
PATPVRILLDKNGGNLSDNVSFDQFNAQLSAVNRHLAAKLVSASQAQIHPLLAQANELAQ
QQLSSIVANASDAMQQSLNNELERLEALSAVNPSIRKDELDTLRQLRDTADDYLQKAQVK
LDALRVILVSHN
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgtcattttctatcggccaacgctggatcagtgattcagaatctgagttaggtttagga
accgtcgttgctatagaaggcagaatggttactctgcttttccctgcatctggcgaaaat
cgtttttatgctatggctgaagcgcctattactcgagtggtatttaatgttggtgatgac
atcaccagtagtgatgattggtctatgaccatcaccgaagtagaagaaaccgacgaactg
attgtttatcacggggttcgtcatgataaccaagacgccgttcagcttcgtgagatgttt
ttaagtcacttcttaaagtttaataaaccgcaagaccgcttatttgccggccaagtagat
cgctttgacagttttgtcgtgcggcatcaaacccaaaagaaacgctttgaacagcaacag
tcagatttaaaaggactgatgggcggaaaagtgagcctgatccctcatcagctttatata
gccagcgaagtgggccgaagaatttcaccacgggtattgctatcagacgaagtgggctta
ggtaaaactattgaagcgggtttgattatccaccagcaattaatcgctggtttagccaaa
cgagtactcattgtcgtccctgatgcacttcagtatcagtggttaattgaaatgctacgt
cgattcaatatgcactttagcttatttgatgaagaccgctgcatcgaagcttatgctgaa
tcggataatccctttgatactgagcaattagtattatgtagccttaactttttacgcagc
cgtaaaaagcgtttcgagcaagtacttgaagccgattgggacctgatgattgttgatgaa
gcccaccatctaaaatgggatgaacaatcacctagccgcgagtatcaaattattgaggct
ctagcgaaacaagtggcaggggtattgttactaactgccacccccgatcagttaggccat
caaagccactttgctcggcttcgcttgttagaccctgaccgtttttacgattaccacgcc
tttatagaagaagaaaaacactatcagccagtggccactgcggctcaatcattattagat
agcgctccgttgctaccaggacaagccaatcaactaactgaattgctgggggagaatgac
attgagcccttgctgaccatcatcaacgatgcagcgtctagttatgagcagcaacagcaa
gcacgtgaagagttattgcagcacctactagacagacacggtactgggcgagtgttattt
agaaatactcgaagtgcgatgcaggggtttcctttgcgacatttaagcagttacccatta
acgctaccgagtcagtatcaaaccgcattaaaagtacatcaaatgatgcaaggttcttcg
tctaaagatgtcatgcagttgatgttccctgaagaattgtatcagcaatttgaaggcgaa
gtagaaggtgaagccagttggagcaagtttgatcctcgaattgattggttagttggcttc
ctacttgctcacaaacaaaagaagatactgcttatttgcgctaaggcagctactgcatta
gccatagaagacgcggtgcgcacacgcgaagggatccgcgcgactgtatttcacgaagat
atgtcgttacttgaacgcgacaaagccgccgcttactttgcccaagatgaagctggcgct
cagttaatggtatgttccgaaattggttctgaagggcgtaatttccagtttgctcaccat
atcgtgttattcgatttgccgattaaccccgatttgcttgagcagcgcattggtcgcctc
gatcgtatcggtcagcagaacgatattgaaatccatgtcccttatttgacagatacgcca
caagaaaccttattacgctggtatcacgaaggccttaacgcttttgagcaaacttgtccg
gctggctcggagatttatgctgagtttggcgaacgcttaaatggcttgctggttcaaaca
aatcccgaacaagagcaactaaaccagcttattgcggagtgttcaaaacgctaccatgtg
gttaaacagaaactggatgcgggacgagaccgcttacttgaaatccattctggtggtgga
agcaaggcaactgaactggttgagaaaattcaagctgcagaacaagatccccattttgtt
acctttagcctgcgtttattcgacaccattggtatcaatcaagatgacaaaggcgagaac
gctctggttttacatgccagcgaacagatgttagtgccaactattcaaggtttacctgaa
gacggttgtaccattacttacgacagggaaactgcgctaagccgtgacgaaatacaatta
atgtcatgggaacacccattactgcaaagctgtatcgatacgattttaagtgcggatctt
ggtaccacttcagtcgccttgctaaaaaacagagccttgccagtaggcagcctattttta
gaaggaatgtttattgttgagaccagtgcaccagctcaatatcaaattgagcgttactta
ccggccacgccagtccgtattctattagacaaaaatggcggtaacctgtcagacaatgtc
agctttgaccaatttaatgcgcaattatctgcagtaaatcgccacttagccgcaaaactg
gttagcgcttctcaagcacaaattcatcccttactagcacaagcgaatgaactagcgcag
cagcaactttcaagtattgtggccaatgccagtgatgcaatgcaacaaagcttaaataat
gaactagaacgcctagaggctcttagtgcggtgaatccaagtattcgtaaagacgagctc
gacacgctccgccaactacgcgataccgcggatgactatctgcaaaaagcccaagttaaa
ctggatgcgttaagggtgatattagtctcacataactaa
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