Agarivorans sediminis: M0C34_18580
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Entry
M0C34_18580 CDS
T08089
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
agz
Agarivorans sediminis
Pathway
agz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M0C34_18580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agz03019
]
M0C34_18580
Enzymes [BR:
agz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M0C34_18580
Messenger RNA biogenesis [BR:
agz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M0C34_18580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Fe-ADH
HEM4
AAA_19
Motif
Other DBs
NCBI-ProteinID:
UPW18204
LinkDB
All DBs
Position
complement(4062556..4063842)
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AA seq
428 aa
AA seq
DB search
MSFELLGLCSALLKSVAEQGYTKPTPIQLEAIPAVLSQRDVMAVAQTGTGKTAGFTLPMV
QLLSGAASPKASSVRALVITPTRELATQVLMNVQNYSRHMNIQSAAVMGGVRIEPQITQL
QAGVDILVATPGRLIDLYKQQAIRFDQLEILVLDEADRMLDLGFIDEMSYLQSVLPSKRQ
TLMFSATFSKQIKSLASGMLNNPLLIEVAAANSTVDSVKQRLHPVDKARKSELLIHLIKR
NNWPQVLVFSRTKLGADSLASQLETAGISAASIHANRTQHARTLALEGFRDGSVAVLVAT
DIASRGIDVSQLSCVINVDLPYVAEDYVHRIGRTGRAGSFGLAVSLFSEDETKQLRAIER
LTGLKFKHDIVPGFAPKPKPKQAVNISDDDDEYGNFEPDPEPQGRAKGRGSRQPKVANRS
GKKRPRNK
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgagttactaggcttgtgtagtgcgctgttgaaaagtgttgctgaacaaggt
tatacaaaaccaacaccgatccaactcgaagcgattccggcggtactgagtcaacgtgat
gttatggcggtggcacaaacgggtaccggtaaaacagcgggttttaccctaccgatggta
cagttgttatctggcgctgctagcccgaaggctagctcggttcgtgcacttgttattact
cccactcgagaacttgccactcaagtgctcatgaatgtacaaaactacagccgtcatatg
aatattcaatcagcggcggtgatggggggggtgaggatagaaccgcaaataacacagttg
caagcgggtgtagatatcttggttgccacccctggccgtttgattgatctatacaagcag
caagcgattcgcttcgatcagcttgagatcttggtgttagatgaagccgaccgtatgctg
gacttagggtttatcgacgagatgagctacctccaaagtgtactgcctagcaaacgtcaa
accttgatgttttcagcgaccttttcaaaacagatcaaatcgctggcgagcggtatgctc
aataatccgctgttgattgaagttgccgccgcaaacagcacggttgattcggttaagcag
cgtctccatccggtagacaaagcgcgtaaaagtgagctgctgattcaccttattaagcgt
aataattggcctcaagtgttggtgtttagtcgtactaaactgggtgctgacagtttagcc
tctcagcttgaaacggctggcattagtgccgcttctatccatgctaaccgaacccaacat
gctcgtacattagctttagaagggtttagagacggcagtgttgcagtgttagttgctact
gatattgcttctcgaggtatagatgttagtcaactgtcttgtgtgattaacgtcgatctg
ccctatgtagcagaagactatgtgcaccgaattggtcgtactggtcgagctggcagcttt
ggtttagcggtttcactgtttagtgaggatgaaactaaacagttgagagcaatagagcgc
ttaacgggcctgaagttcaaacatgacattgtccctggctttgcgcccaagcccaaaccg
aagcaagccgtgaatatatcggatgatgatgacgaatatggcaattttgagccagaccca
gaaccgcaaggccgagctaaagggcgaggaagtcgtcagcccaaggtggctaatcgcagt
ggcaaaaaacgaccgcgcaataaatga
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