Agarivorans sediminis: M0C34_20095
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Entry
M0C34_20095 CDS
T08089
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
agz
Agarivorans sediminis
Pathway
agz03420
Nucleotide excision repair
agz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
agz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M0C34_20095 (uvrD)
03430 Mismatch repair
M0C34_20095 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agz03400
]
M0C34_20095 (uvrD)
Enzymes [BR:
agz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M0C34_20095 (uvrD)
DNA repair and recombination proteins [BR:
agz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
M0C34_20095 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
M0C34_20095 (uvrD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
Viral_helicase1
RAG1
DUF3553
Motif
Other DBs
NCBI-ProteinID:
UPW18491
LinkDB
All DBs
Position
complement(4388346..4390520)
Genome browser
AA seq
724 aa
AA seq
DB search
MDISELLDGLNDKQREAVAAAPSNMLLLAGAGSGKTRVLVHRIAWLMQVENVSPLSILSV
TFTNKAAAEMRSRVEKLVGNRFQGMWMGTFHSLAHRLLRAHSRDAGLPDDFQIIDSDDQY
RLLRRLIKAMNLDEKQWPAKQVQWYINARKDEGQRAEHVDYSNNPIERQQLEIYQAYQQA
CDRSGLVDFAELLLRAHELWLKQPHILHHYQQRFRHILVDEFQDTNTIQYAWLRMLVTDH
NNITIVGDDDQSIYGWRGAKIENIQSFERDVPKVNTIRLEQNYRSSANILKASNQLIENN
QGRMGKSLWTDDKDGELISIYTAFNDIDEARFVVARIQQRVEEHGASLADCAILYRNNAQ
SRVLEEALMQERLAYRIYGGLRFFERQEIKDALAYLRLISNPHDDASFERVVNTPTRGIG
QRTIELLRQAAREQQLSLWQAVDYCLQQNALSGRAANAVSQFVQLLQQLKLQTQEMALGE
QTDYVVKGSGLLAMYQAEKGEKAQARVENLDELVTATQQFTQMEEDQDLSPLVAFLSHAA
LEAGDNQAEADEAAVQLMTLHSAKGLEFPVVFLVGVEEGMFPSQQSAEESGRLEEERRLC
YVGMTRAMQKLYLCHAESRRLWGKEVFHPPSRFLRELPSECLDEIRLNTAVSRPVQQGRF
SHQIQQAAFDDSGFSLGQRVAHPKFGAGIVLNYEGSGQQSRVQVQFEEAGAKWLVLAYAR
LEKI
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atggatatttctgagctgttagacggcctcaatgataagcagcgcgaagccgtcgccgct
gcacctagcaacatgttattactcgcgggcgctggtagcggtaaaacgcgtgtcttggtg
catcgcattgcatggctaatgcaggtggaaaatgtttctccactatcaattttgtcggtc
acctttaccaacaaagcggcagcagaaatgcgttcacgggttgagaaattagtcggcaat
cgctttcaaggtatgtggatggggacctttcactcgctggcgcatcgcctattacgtgcc
cactctcgtgatgcaggcctgcccgatgactttcaaatcatcgattctgacgatcaatat
cgcctattgcgtcgcttaatcaaggcgatgaatctagatgagaaacaatggcccgccaag
caagttcaatggtatatcaatgcgcgtaaagatgagggccaacgggctgaacatgtagac
tacagtaacaatcccattgagcgtcagcagttagaaatttatcaagcgtatcagcaagca
tgtgatcgctctggtttggtcgattttgctgaattgttgttacgcgcccacgaattgtgg
ctaaaacagccgcatatcttgcaccactaccaacagcgttttcgccatattctggtggac
gaatttcaagataccaacaccattcaatatgcttggctacgaatgttggttaccgaccac
aataacatcactatcgtaggcgatgacgaccagtctatttacggctggcgtggtgctaaa
attgaaaatattcaaagcttcgaacgagatgtaccaaaggtgaatactattcgtcttgag
caaaattatcgaagcagcgccaatattctaaaagcctccaatcagcttatcgaaaacaac
caaggtcgtatgggtaaaagtctctggaccgatgataaagatggagagttgatttctatt
tacaccgcttttaatgatatcgacgaagcccgctttgtggtggcgcgtattcaacagcgt
gttgaagagcatggcgctagcctcgctgactgtgccattttgtatcgtaacaatgctcag
tcgcgggtattggaagaagcgctaatgcaagagcgtttggcttatcgcatctatggtggc
ttacgcttcttcgagcgccaagaaatcaaagacgccttggcctatttacgtttaatcagt
aatcctcacgatgacgcctcgtttgaacgtgtggtcaatacccctacccgtgggattggg
cagcgaaccattgagttgctgcgtcaagctgcccgtgagcagcagttaagcctgtggcaa
gcggtagactattgtttgcaacaaaatgccctgtcggggcgtgcggccaatgcagtgagt
caatttgtacagttgctacaacagcttaagttacaaactcaagaaatggccctaggcgag
caaactgactacgtagttaagggctctggtctactagcgatgtatcaagctgaaaagggc
gaaaaagcgcaagctcgagtagaaaacttagatgaactggtcaccgccacccagcaattc
acgcaaatggaagaagaccaagatctttcgcctttggtggcttttttatcacatgcggcc
ttagaagcgggtgacaatcaagctgaagctgatgaagcggcggtgcagctcatgaccttg
catagtgccaagggcttagagttcccagttgtgtttttagtgggcgtcgaagaaggcatg
ttcccaagccagcagtcggcggaagagtctggacgactcgaagaagagcgccgactgtgt
tacgtgggcatgacccgagccatgcaaaaattatatttatgccatgctgagagccgtcgt
ttgtggggaaaagaggtttttcatccgccttcacgcttcttgcgtgagctacccagtgaa
tgcttggatgaaatccgcttgaataccgctgttagccgaccagtgcaacaaggacgcttt
tctcaccaaatacaacaagctgcctttgatgatagtggttttagtttagggcagcgagtt
gcccaccctaaatttggtgcgggtatcgtgttgaattatgaaggctctgggcaacaaagt
cgggtgcaagtgcagtttgaagaagcgggcgcgaaatggctggtactcgcttacgcccga
ctcgaaaaaatctaa
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