Aeromonas hydrophila subsp. hydrophila ATCC 7966: AHA_0554
Help
Entry
AHA_0554 CDS
T00424
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
aha
Aeromonas hydrophila subsp. hydrophila ATCC 7966
Brite
KEGG Orthology (KO) [BR:
aha00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
aha03016
]
AHA_0554 (rnb)
Enzymes [BR:
aha01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AHA_0554 (rnb)
Transfer RNA biogenesis [BR:
aha03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
AHA_0554 (rnb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
ABK38105
UniProt:
A0KFR1
LinkDB
All DBs
Position
complement(587343..589364)
Genome browser
AA seq
673 aa
AA seq
DB search
MFQDNPLLAQLKQQIRENIPKKEGVIRASDRGFGFLEVDEKTSYFVPPPYMKKVMHGDRV
SALIRTEKEKEVAEPDALLEQSVTRFVARVKMFRDRLNVVADHPLIKDAIKARVKKGLDE
KEFKEGDWVVATLKRHALVDGNFSAEITQTIASQEDHNVPWWVVLARHNLAQVEPADLPE
WKVIEEEELPRTDLTATPFFTIDGAKTKDMDDALAIRKLDNGWELLVAIADPTAYVAEGS
ELDKEAAQRAFTVYMPGRNVPMIPRTLSDELCSLKEGEERNTLCARLLIAEDGLLLEETE
FFAARISSHARLTYDDVSDWAEHGKQLDIDAGVLAQLPLMKAMTEARIAWRTEHALVFPD
RPDYDFELGENGEVLAIHVEPRRIANRMVEESMIAANICAGRVLGKQVGYGIFNVHTGFD
EESLDGAIDLLKSAEAPFEKEEIASLSGFCALRRWIDNLDTRWLDGKIRRFQSYALMSAE
PGAHYGLGLDAYATWTSPIRKYGDMVNHRLLKAVIAGKTPGERPSLELTEHLTACRRLHR
MVERDIGDWLYVRYLKADAGTDKVFNAEIIDVMRAGLKLRLRENGAVVFMPARHILDNKD
RLECNWDNGRVYLDKTEVVYELGQIIEVKLTEAVEETRSLIAKPAVELVPGPAPVAPTSE
ADATPADEAPKAE
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgttccaagacaatccgctgctggcccagctcaagcaacaaatccgcgaaaacatcccc
aagaaagagggtgtgatccgcgcctccgatcgaggcttcggcttcctggaggtcgatgag
aagaccagctatttcgtgccgcctccctacatgaagaaggtgatgcacggtgaccgggtg
agcgccctgatccgtaccgaaaaagagaaggaagtggccgagccggatgccctgctggag
cagtccgtcacccgtttcgtggcccgcgtcaagatgttccgcgaccgcctcaacgtggtc
gccgatcacccgctgatcaaggatgccatcaaggcccgcgtcaagaaggggctggacgag
aaagagttcaaggaaggggactgggtggttgccaccctcaagcgtcacgccctggtggac
ggcaacttctctgccgagatcacccagacgatcgcctcgcaggaagatcacaacgtgccc
tggtgggtggtgctggcgcgccataacctggcccaggtcgagccggcggatctgccggag
tggaaggtgatcgaagaggaagagctgccgcgcaccgatctgaccgcgacccccttcttc
accatcgacggcgccaagaccaaggacatggacgatgccctggccatccgcaagctggac
aacggctgggagctgctggtggccatcgccgacccgaccgcctacgtggccgaagggagc
gagctggacaaggaagctgcccagcgcgccttcaccgtctacatgccgggccgcaacgtg
ccgatgatcccacgcaccctctccgacgagctctgctccctgaaagagggcgaggagcgc
aacaccctgtgtgcccgtctgctcatcgccgaggatggcctgctgctggaagagaccgag
ttcttcgccgcccgcatcagctcccacgcccgtctcacctatgacgacgtctccgactgg
gccgaacacggcaagcagctggatatcgacgccggcgtgctggcccaactgccgctgatg
aaggcgatgaccgaggcgcgcatcgcctggcgtaccgagcatgccctggtattcccggat
cgtcccgactacgacttcgagctgggcgagaacggcgaagtgctggccatccacgtcgag
ccacgccgcatcgccaaccgcatggtggaagagtcgatgatcgccgccaacatctgtgcc
ggccgcgtgctcggcaagcaggtcggctacggcatcttcaacgtccacaccggctttgac
gaagagtccctcgacggcgccatcgatctgctgaaaagcgccgaggccccgttcgagaag
gaagagattgccagcctgtccggcttctgcgccctgcgccgctggatcgacaacctggac
acccgctggctggacggcaagatccgccgcttccagagctatgcgctgatgtccgccgag
ccgggcgcacactacggcctggggctggatgcctatgccacctggacctcaccgatccgc
aaatacggcgacatggtcaaccatcgcctgctgaaggccgtcatcgccggcaagaccccg
ggtgagcgcccgagcctggagctcaccgagcacctgaccgcctgccgccgcctgcaccgc
atggtggagcgcgacatcggcgactggctctatgtccgctacctcaaggccgatgccggc
accgacaaggtgttcaacgccgagatcatcgacgtgatgcgcgccggcctcaagctgcgt
ctgcgcgagaacggcgccgtggtgttcatgcccgcccgccatatcctggacaacaaggat
cggctggagtgcaactgggacaatggtcgcgtctatctggacaagaccgaggtggtctac
gagctcggccagatcatcgaggtcaagctgaccgaagcggtggaagagacccgctccctc
atcgccaagccggcggtggagctggtgccgggcccggcgccggtcgccccgaccagcgag
gccgatgccacgcctgccgacgaggcccccaaggccgaataa
DBGET
integrated database retrieval system
