Aeromonas hydrophila subsp. hydrophila ATCC 7966: AHA_1188
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Entry
AHA_1188 CDS
T00424
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
aha
Aeromonas hydrophila subsp. hydrophila ATCC 7966
Pathway
aha03030
DNA replication
aha03430
Mismatch repair
aha03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AHA_1188 (dnaE)
03430 Mismatch repair
AHA_1188 (dnaE)
03440 Homologous recombination
AHA_1188 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aha03032
]
AHA_1188 (dnaE)
03400 DNA repair and recombination proteins [BR:
aha03400
]
AHA_1188 (dnaE)
Enzymes [BR:
aha01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AHA_1188 (dnaE)
DNA replication proteins [BR:
aha03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AHA_1188 (dnaE)
DNA repair and recombination proteins [BR:
aha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AHA_1188 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
ABK37210
UniProt:
A0KHH8
LinkDB
All DBs
Position
1286293..1289772
Genome browser
AA seq
1159 aa
AA seq
DB search
MAEPRFIHLRVHSDFSMVDGLQKINPIVGAAAANNMPALALTDQMNMCGLVRFYGAAHGK
GVKPIVGADFWVQSDELGDEQFRLTLLAMDNDGYQNITLLISRGYQRGHVQGRPVIDKAW
LAEHAKGVIVLSGGREGDVGKFLLKGNRQMTEQCLAFYQTHFPDAYYLELLRTGRPDEEV
YLHMAVAIATEFALPVVATNEVVFLTADDFDAHEIRVAIHDGYTLMDKRRPRRYSPQQYL
RSQEEMAELFADIPEALENTVEIAKRCNVTVRLGEYFLPNFPTGDMTTEDFLVMKSKEGL
EERLEFLFPDPAVRAERRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNGIPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVSE
MYGREAVSQIITFGSMAAKAVVRDVGRVLGHAYGFVDRISKLIPPDPGMTLAKAFEAEPK
LPELYEQDEEVKDLIDMARRLEGVVRNAGKHAGGVVIAPTKITDFAPLYCDDEGHHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKEGKPPVDIAAIPIDDKRSFDLL
QRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGKEA
ISYPDEKWQHESLQPILEPTYGIILYQEQVMQIAQTLAGYTLGGADMLRRAMGKKKPEEM
AKQRAGFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPA
EFMAAVMTADMDNTDKIVTLVDECQRMGLTVIPPDVNTGRYRFSVNEDGHIVYGIGAVKG
VGEGPIDAILEARDRDGPFRDLFDFCNRVDIKKLNKRVMEKLILSGAMDRLGPHRAALMA
TLEEAMRAAEQHAKAQAVGQVDMFGVLTEEIDDVKKAFANVPHWPDKVWLEGERETLGLY
LTGHPINQYSGELRRYTSGRLCDLHPTSRDTVTTAAGLVIAARSMVTKRGNKMGIFTLDD
RSGRLDVTLFSEALEKYEELMQKDRILVVSGQVSFDDFSGGLKMSARELLDINDARERFA
RAIRISLDEQQIDDRFFPRLCEILEPARAGVCPVQVNYRRPGSRVRLTLGTEWRVTPTDQ
LIDDLRVLLGRERVELVFD
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaccccgttttatccacctgcgggtccactccgacttctccatggtcgacggc
ctgcagaagatcaatcccatcgtcggtgcggcggcagccaacaacatgccggcgctggcg
ctgaccgaccagatgaacatgtgtggcctggtgcgcttctacggcgccgcccacggcaag
ggcgtcaagcccatcgtcggggccgacttctgggtgcagagtgacgagctcggcgacgag
cagttccgtctcaccctgctcgccatggacaacgacggctaccagaacatcacattgctc
atctcccgcggctatcagcgcggtcacgtgcaggggcgcccggtcatcgacaaggcctgg
ctggccgagcacgccaagggagtgatcgtgctctccggcgggcgcgagggggacgtgggc
aagttcctgctcaagggcaaccggcagatgaccgagcagtgtctcgccttctatcagacc
cacttccccgacgcctattatctggagctgctgcgcaccggccgccccgatgaagaggtc
tacctgcacatggcggtggcgattgccaccgagtttgcgctgccggtggtggccaccaac
gaggtggtattcctcaccgccgatgacttcgatgcccacgagatccgggtcgccatccac
gacggctataccctgatggacaagcgccggccgcgtcgctacagcccgcagcagtatctg
cgcagccaggaggagatggcggagctgtttgccgacatccccgaggcgctggagaacacg
gtggagatcgccaagcgctgcaacgtgacggtgcgcctcggcgaatacttcctgcccaac
ttcccgaccggtgacatgaccaccgaagacttcctggtcatgaagtcgaaagaggggctg
gaggagcggctggaattcttgttcccggatccggcggtgcgggccgagcgtcgtcccgag
tatgacgagcggctcgacatcgagctcaaagtgatcaaccagatgggcttcccgggttac
ttcctcatcgtgatggagtttatccagtggtccaaggacaacggcatccccgttggccca
ggccggggctcgggggcgggttccctggtggcctacgccctcaagatcaccgatctggat
ccgctggaatttgacctgctgttcgaacgtttcctgaaccccgagcgggtatccatgccc
gactttgacgtcgacttctgcatggacaggcgcgacgaggtgatcgaccacgtctccgag
atgtacggtcgggaagcggtatcgcagatcatcaccttcggcagcatggcggccaaggcg
gtggtgcgggacgtgggccgggtgctgggccatgcctacggcttcgtcgatcgtatctcc
aagctgatcccgccggatccgggtatgacgctcgccaaggcgttcgaggccgaacccaag
ctgcccgagctctacgagcaggacgaggaggtcaaggacctcatcgacatggcacgccgc
ctggaaggggtggtgcgcaacgccggcaaacacgccggcggcgtggtgatcgcgcccacc
aagatcaccgacttcgcgccgctctactgcgatgacgaaggccatcacccggtcacccag
ttcgacaagaacgacgtggagtacgccgggctggtgaagttcgacttcctcggcctgcgc
acgctcaccatcatcgactgggcgctcggcatgattaacccgcgccttgccaaagagggc
aagccgccggtcgacatcgccgccatccccatcgacgacaagcgctcgttcgacctgctg
cagcgctacgagaccaccgcggtattccagctggaatctcgcggcatgaaggatctcatc
aagcggctgcagcctgactgcttcgaagacatgatcgcactggtggcgctgtttcgcccg
ggcccgctgcagtcgggcatggtggacaacttcatcgagcgcaagcacggcaaggaggcc
atctcctatccggacgagaagtggcagcacgagagcctgcagccgatcctcgagcccacc
tacggcatcatcctctatcaggagcaggtgatgcagattgcccagaccctggcgggttat
acgctgggtggtgcggacatgctgcgccgggcgatgggcaagaaaaaacccgaagagatg
gccaagcaacgggccggcttcgaggagggcgcggtcaagaacggcgtcgacggcgagctg
gcgatgaagatcttcgatctggtggagaagtttgcaggctacggcttcaacaaatcccac
tctgccgcctatgcgctggtctcctaccagaccctctggctcaagacccacttcccggcg
gagttcatggcggcggtgatgactgccgacatggacaacaccgacaagatagtgaccctg
gtggacgagtgccagcggatggggttgaccgtgatcccgccggacgtgaacaccggtcgc
taccgcttcagcgtcaacgaagacggccatatcgtctacggcatcggcgcggtgaagggg
gtgggggaaggccccatcgatgcgattctggaagcgcgggatcgggacgggccgtttcgc
gatctgttcgacttctgcaaccgggtcgatatcaagaagctcaacaagcgggtgatggag
aagctcattctctccggcgccatggaccggctcggcccccaccgcgccgccctgatggcg
accctggaggaggcgatgcgcgccgccgagcagcacgccaaggcgcaggcggtgggtcag
gtcgacatgttcggcgtgctcaccgaagagatagacgacgtcaagaaggcgttcgccaac
gtgccacactggcctgacaaagtgtggctggaaggggagcgcgagaccctcggtctctac
ctcaccggtcaccccatcaaccagtacagcggcgagctgcgtcgttatacctcgggccgg
ctgtgcgatctgcaccccacctcccgcgataccgtgaccacggccgccggcttggtgatt
gcggcgcgcagcatggtgaccaagcgtggcaacaagatggggatcttcaccctggacgac
cgttccggtcgcctcgatgtgaccctgttcagtgaagcgctggaaaagtatgaagaattg
atgcaaaaagaccgtattttggtggtttctggacaggtcagctttgatgacttctccggt
ggccttaaaatgtcggcccgtgaattactggatatcaacgatgcgagagagcgttttgcc
agagcgatccgcatctctctcgatgaacagcagattgatgatcgttttttcccgcgtttg
tgcgagattttggaacccgcccgtgccggagtttgtccggttcaggtaaactatcgtcgc
cccggctcccgggtgcgattgacgctcggtaccgagtggcgggtgacgcccaccgatcaa
ctgatagatgacttgcgcgtcctgcttggacgagagcgggttgaattggtttttgattag
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