Aeromonas hydrophila subsp. hydrophila ATCC 7966: AHA_2646
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Entry
AHA_2646 CDS
T00424
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aha
Aeromonas hydrophila subsp. hydrophila ATCC 7966
Pathway
aha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AHA_2646
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aha03019
]
AHA_2646
03009 Ribosome biogenesis [BR:
aha03009
]
AHA_2646
Enzymes [BR:
aha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AHA_2646
Messenger RNA biogenesis [BR:
aha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AHA_2646
Ribosome biogenesis [BR:
aha03009
]
Prokaryotic type
rRNA helicases
AHA_2646
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
AAA_19
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ABK39739
UniProt:
A0KLK4
LinkDB
All DBs
Position
complement(2948749..2950677)
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AA seq
642 aa
AA seq
DB search
MLAACLNLEESMSDTEQLPLFSELGLAAPVLKALQDVGYERPSPIQAAAIPHLMAGHDLL
GQAQTGTGKTAAFALPLLSRLEAGNRNTQILVLAPTRELALQVAEACQRYAHHMPDFHVL
PIYGGASYETQTRALRRGAQVVVGTPGRVMDLIRRKNLDLSGLKALVLDEADEMLRMGFI
DDVDWIMEQCPAGRQVALFSATMPEQIRRVAQKHLKQPKEIKIASKTATATTIRQRYWQV
TGLHKLDAMTRLLEVEPYEALLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERT
VDKLRQGQLDILIATDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAIL
FVAPRERRMLRAIEHATRQAIEPMKMPSTEDINQHRLAKFKERIRETMMGEELEIYVNLV
NELIEEDSADPLELAAALAKLVQGDQPLLLDDSIPDPVFNAGNDRGGFERRDFNDRGGRD
FADRGDRPARRMPSLEPRPLKDNPDVEMERYRVDVGAHHGVKPGQIVGAIANEANIESRF
IGNIDIADDFSTVDLPKGMSAEVLEVIKKARVCQRPLQISRYTEVPAGSNTAPRPPRGDR
PFRGDRPFNKDRRPQGDRPFNKDRREGGFDKGRKFGGKRRDS
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
gtgttagccgcctgccttaatctggaagaatctatgtctgataccgaacaactgcccctt
tttagtgagcttggactggccgcgcctgtactgaaagcgctgcaggacgtgggctatgag
cgcccgtcccccatccaggccgcagcaattccccacctgatggcgggccacgatctgctg
gggcaggcgcaaaccggtacagggaagaccgctgcttttgccttgcctctgttgtctcgt
ctggaagctggtaaccgcaacacccagatcctggtgctggcaccgactcgtgaacttgcc
ctgcaggtggctgaagcgtgccaacgctatgcccaccacatgcctgatttccacgtgctg
cccatctacggcggcgcctcctacgaaacccagacccgcgccctgcgccgcggtgctcag
gttgtcgtgggtaccccgggccgcgtgatggacctgatccgtcgcaagaacctggacctc
tctggcctgaaagccctggtgctggacgaagcggacgagatgctgcgcatgggcttcatc
gacgacgtggactggatcatggaacagtgcccggctggtcgtcaggttgccctgttctct
gccaccatgccggagcagatccgtcgtgtggcccagaagcacctgaagcagcccaaagag
atcaagatcgcttccaagactgcgaccgctaccactatccgccagcgttactggcaggtg
accggtctgcacaagctggacgccatgacccgtctgctggaagtcgagccctacgaagcc
ctgctggtgttcgtacgcaccaagaacgccgccgaagaactggctggcaagctggctgcc
cgtggtcacgcctgtgaagcgctgcacggtgacattccgcagaagctgcgtgaacgtacc
gtcgacaagctgcgccaaggccagctggacatcctgatcgccaccgacgtggttgcccgt
ggtctggacgttgagcgcatcacccacgtggtgaactacgacatcccctacgacaccgaa
tcctacgttcaccgtatcggtcgtaccggtcgtgccggtcgcaagggcgaagccatcctg
tttgtggcaccgcgcgagcgtcgcatgctgcgcgccatcgagcacgcaacccgtcaggct
atcgagccgatgaagatgccgagcaccgaggacatcaaccagcaccgtctggccaagttc
aaagagcgcatccgcgaaaccatgatgggcgaagagctcgagatctacgtgaacctggtg
aacgagctgatcgaagaagactctgccgatccgctggagctggctgctgcactggctaag
ctggtacagggcgaccagccgctgctgctggatgactccattccggatccggtgttcaac
gccggcaacgatcgcggtggtttcgagcgtcgtgacttcaacgaccgtggtggccgtgat
ttcgccgaccgtggcgatcgcccggctcgtcgcatgccgtccctggagccgcgtccgctc
aaagacaacccggacgtggaaatggagcgctaccgcgtcgacgtgggtgcccatcacggc
gtcaagccgggccagatcgtgggtgccatcgccaacgaagcgaacatcgagagccgcttc
atcggcaacatcgacatcgccgatgacttctccaccgtcgatctgcccaagggcatgagc
gccgaagtgctggaagtgatcaagaaggcccgtgtctgccagcgtccgctgcagatcagc
cgctacaccgaagtgccggccggcagcaacacggctccccgtccgccccgtggtgatcgt
ccgttccgtggcgaccgtcctttcaacaaggatcgccgtccgcagggtgaccgtcccttc
aacaaggatcgccgtgaaggcggttttgacaagggtcgcaaattcggtggcaagcgccgc
gacagctaa
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