Aeromonas hydrophila subsp. hydrophila ATCC 7966: AHA_3104
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Entry
AHA_3104 CDS
T00424
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
aha
Aeromonas hydrophila subsp. hydrophila ATCC 7966
Brite
KEGG Orthology (KO) [BR:
aha00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aha03032
]
AHA_3104 (topA)
03400 DNA repair and recombination proteins [BR:
aha03400
]
AHA_3104 (topA)
Enzymes [BR:
aha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
AHA_3104 (topA)
DNA replication proteins [BR:
aha03032
]
Prokaryotic type
DNA Topoisomerases
AHA_3104 (topA)
DNA repair and recombination proteins [BR:
aha03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AHA_3104 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
ABK39893
UniProt:
A0KMV3
LinkDB
All DBs
Position
complement(3504699..3507320)
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AA seq
873 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKDYVVKSSVGHVRDLPTSGSASNEPKKPVIRGIKLSEA
EKAAKDRNALFSRMGINPTAGWQANYQILPGKEKVVSELQSLAEKADTIYLATDLDREGE
AIAWHLREIIGGDDSRYKRVVFNEITKTAIQEAFAQPSELNIHRVNAQQARRFLDRVVGY
MVSPLLWKKLARGLSAGRVQSVAVRLIVDKEREIKAFVPVEFWDLNADLLTADKSDLRME
VVSRNGVDFKPVTQAETFAAVAALEGVDYKVVNREDKPTGSKPSAPFITSTLQQAASTRL
SFGVKKTMMMAQRLYEAGYITYMRTDSTNLSKEAVEAVREYIGEQYGAAYLPSDPNLYGA
KANAQEAHEAIRPSSVLVTAEMLEGMEPDAMRLYDLIWRQFVACQMTPAQYDSSTLTVKA
GEFELKARGRTLRFAGWTKALPPMGRKGEDSQLPAVTVGEILKLVKLDPRQHFTKPPARF
TEAALVRELEKRGIGRPSTYASIISTIVDRGYVRVESRRFFAEKMGEIVTDRLVENFVEL
MNYEFTAKMEDKLDGIAEGSLEWKKVLDAFYAEFTQELEKADKAPEEGGMRANQMVLTDI
DCPDCGRKMGIRTATTGVFLGCSGYALPPKERCKKTINLVSADEFVSATDGEEAETEALR
AKHRCTICGTAMDAYIIDDSRKLHVCGRNPDCDGYEIEKGQFKLKGYEGPSIECDRCGSE
MQLKNGRFGKYMGCTNDTCKNTRKILKNGDIAPPKEDPVPLPELKCTQSDAHFVLRDGAA
GLFLAASNFPKSRETRAPLVEELKRFKERLSPKHQYLADAPASDPDGNAAIVRFSRKTKE
QYVMTEVNGKATGWTAHYDNGKWQESLAKSKKA
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcactggtcatagtggagtctccggccaaggccaagaccatcaacaaatat
ttgggcaaggactacgtggtgaaatccagcgtcggtcacgtgcgcgatctgcccaccagc
ggcagcgccagcaacgagcccaaaaaacctgtcattcgcggcatcaagctgagcgaagca
gagaaggctgccaaggatcgcaatgccctgttctcacggatggggatcaatccgaccgca
ggctggcaggccaactaccagattttgcccggcaaggaaaaagtggtcagcgagttgcag
agtctggccgagaaggccgacaccatctatctcgcaaccgacttggatagagagggagaa
gcgatcgcctggcacctgcgcgagatcatcggcggcgacgacagccgctacaagcgcgtg
gtgttcaacgagatcaccaagaccgccatccaggaggcgtttgcccagccatccgagctg
aacattcaccgcgtcaatgcccagcaggcacgtcgtttcctcgaccgggtggtgggttac
atggtctccccgctgctctggaagaagctggcccgcggcctctccgccggtcgggtacag
tccgtcgcggtgcgcctcatcgtcgataaagagcgcgaaatcaaggcgttcgtgccggtc
gagttctgggatctcaacgccgatctgctgaccgccgacaagagcgatctgcggatggaa
gtggtcagccgcaatggtgtcgacttcaagccggtgacccaggccgagaccttcgccgcc
gtggccgccctggaaggggtcgactacaaggtggtgaaccgggaagacaagccgaccggc
tccaagccgtccgctcccttcatcacttctaccctgcagcaggcagcctcaacccggctg
agcttcggggtcaagaagaccatgatgatggcccagcgcctctatgaagcgggttacatc
acctacatgcgtaccgactccaccaacctcagcaaagaggcggtcgaggcggtgcgggaa
tacatcggcgagcagtatggcgccgcttatctgccgagcgatccgaacctgtacggcgcc
aaggccaatgcccaggaggcccacgaggcgatccgcccctccagcgtgctggtgactgcc
gagatgctggaagggatggagccggacgccatgcggctgtatgacctcatctggcgtcag
tttgtcgcctgtcagatgacgccggcccagtacgactcctccaccctgaccgtcaaggcg
ggcgagttcgagctcaaggcgcgcggtcgtaccctgcgcttcgccggttggaccaaggcg
ttgccgccgatgggccgcaagggcgaagacagccagctgccggcggtgaccgtcggtgag
atcctcaaactcgtcaagctggatccgcgccagcacttcaccaagccgcctgcacgtttt
accgaagcggcgctggtacgcgagctggagaagcgcggcatcggccgtccgtctacctac
gcctccatcatctccaccatcgtcgaccgtggttatgtacgggtcgagagccgccgtttc
ttcgccgagaagatgggtgagatcgtcaccgaccggctggtggaaaacttcgtcgagctg
atgaactacgagttcaccgccaagatggaagacaagctcgatggcatcgccgaagggagc
ctggagtggaagaaggtgctggatgccttctacgccgagttcacccaggagctggagaaa
gcggacaaggcgccggaagaggggggcatgcgtgccaaccagatggtgctgaccgacatc
gactgcccggattgcggccgcaagatgggcatccgtaccgccaccaccggggtgttcctc
ggctgttccggctacgcactgccgcccaaagagcgctgcaagaagaccatcaacctggtc
tccgccgacgagttcgtctccgccaccgacggtgaagaggccgaaaccgaggcgctgcgt
gccaagcaccgctgcaccatttgcggcaccgccatggatgcctacatcatcgacgacagc
cgcaagctgcacgtctgtggtcgcaacccggattgcgatggctacgaaatcgaaaaaggc
cagttcaagctcaagggttacgaagggccgagcatcgagtgtgaccgctgcggatccgag
atgcagctcaagaacggccgcttcggcaagtacatgggttgcaccaacgatacctgcaag
aacacccgtaagatcctgaaaaacggtgacatcgcgccgccgaaggaagatccggtcccg
ctgccggagctcaagtgcacccagtccgacgcccacttcgtgctgcgtgacggagcggcc
ggcctgttcctggccgccagcaacttcccgaaatcccgcgagacccgtgcgccgctggtg
gaagagctcaagcgcttcaaggagcgtctgtcgcccaagcaccagtatctggccgatgcc
ccggcgtcagatcctgacggaaacgccgccatcgtgcgcttcagtcgcaagaccaaggag
cagtacgtgatgaccgaggtcaacggcaaggcgaccggctggacggcgcactacgacaac
ggcaagtggcaggagagcctggccaagtcgaagaaggcgtga
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