Aeromonas hydrophila subsp. hydrophila ATCC 7966: AHA_3923
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Entry
AHA_3923 CDS
T00424
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
aha
Aeromonas hydrophila subsp. hydrophila ATCC 7966
Pathway
aha02020
Two-component system
aha02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
aha00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
AHA_3923 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AHA_3923 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aha03021
]
AHA_3923 (rpoN)
Transcription machinery [BR:
aha03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AHA_3923 (rpoN)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
TetR_C_5-like
Motif
Other DBs
NCBI-ProteinID:
ABK37278
UniProt:
A0KQ11
LinkDB
All DBs
Position
complement(4350676..4352115)
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AA seq
479 aa
AA seq
DB search
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENDVQETSPE
EPVDASQLDSSDAMSQDNMPDELPVDTTWEEVYSAGTAQSAGPIHDGEDSIYQGETTENL
QDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVSLEDIQTAVSSEDVEVELDEVEAV
LKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLNEAKEVILEHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQQLEPRPGNGVIQSESQYVIPDVSVVKKGNKWVVELNPDSAPRIR
VNETYAAMARQARTSQDTQFIRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYG
EEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFELKFFFSSHVNTEGGGECSST
AIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgacattacagttgcgtctcggccagtccctgaccatgacgccgcaattacaa
caagcgattcgtctgctccagctctccactctggaactccagcaggaaattcagcaagcg
ctcgacaacaaccccttgctggagcaagaggaaaatgatgtgcaggagaccagcccggaa
gagccggtcgatgccagccaactcgactccagcgatgccatgtctcaggacaacatgccg
gacgaactgccggtagataccacctgggaagaggtctactcggccggcacggcccagagc
gcgggcccgatccacgacggtgaagacagcatctatcagggcgaaaccaccgaaaacctg
caggattatctgttgtggcagatgcgcctgacgccgttcagcgacgtggatgccgccatc
gccctcgccatcatcgacgccatcgacgaatccggttatctgacggtatcgctggaagat
atccagactgcggtaagcagcgaggatgtcgaggtggagctcgatgaagtggaggcggtg
ctcaagcgagtgcagcacttcgatccggtcggcattgccgcccgctcggtacaagagtgc
ctgctgatccagctgggccaatactcccccgacctgccctggctcaacgaggccaaggag
gtgatcctcgagcacatggacttgctcggcaatcgcgactaccgcaccctggcgcgcaag
acccggctcaaggagagcgacctcaaggaggtgctggatttgatccagcagctggagccg
agacccggcaacggcgtcatccagagcgaatcccagtacgtgatcccggatgtttccgtg
gtcaagaagggcaacaagtgggtggtcgagctcaacccggactcggccccgcgcatccgg
gtcaacgagacctatgccgccatggcccgtcaggcgcgcaccagccaggatacccagttc
atccgctcccacctgcaggaagccaagtggttcatcaagagtctggagagccgcaacgac
accctgctcaaggtggccagctgtatcgtcgagcagcagcagggctttttcgaatacggt
gaagaggccatgaaacccatggtgctcaacgacatcgccgaagcggtggagatgcacgag
tcaaccatctcgcgggttacgacccagaagtacatgcatacgccgcgcggcatcttcgaa
ctgaagttttttttctccagtcatgtcaacacggagggaggaggagagtgctcatcgacc
gcaattcgcgcgctcatcaagaagctggtcacggcggagaatcccgccaagccgctaagt
gatagcaagatcgcggatttgctggccgaacagggtattatggtggcgagacgcacgatc
gcaaagtaccgtgaatccttgttgatcccgccatccaatcagcgcaaacgcctggtttag
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