Anoxybacterium hadale: FRZ06_04105
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Entry
FRZ06_04105 CDS
T10883
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ahad Anoxybacterium hadale
Pathway
ahad02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ahad00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FRZ06_04105 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ahad03021
]
FRZ06_04105 (rpoD)
Transcription machinery [BR:
ahad03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FRZ06_04105 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r4
Sigma70_r2
Sigma70_r1_2
Sigma70_r1_1
HTH_10
Exonuc_VII_L
Sp-DndD
YusW
FokI_D3
DnaD_N
TcaA_2nd
Phage_TAC_12
Motif
Other DBs
NCBI-ProteinID:
QOX62585
LinkDB
All DBs
Position
939467..940609
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AA seq
380 aa
AA seq
DB search
MSYEEGHEDKKFEYVNELLEKAKSKGSISYREISDYLENIDMDKDQMDDLYDSLISMGIE
IVSEVDPDDFEIIALEHEEDVDVSLDDINLEGGEIDLEATLPKGIAVDDPVRMYLKEIGK
VPLLSAEEEIDLAKLMEQGDDEAKKRLCEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGL
IKAVDKFDWRKGYKFSTYATWWIRQAITRSIADQARTIRIPVHMVETINKLIRISRQLLQ
EYGREPTPEEIAAEMDISEEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDDDVPAPA
EAAAFSMLKEQLVEVLDTLTDREQKVLKLRFGLDDGRARTLEEVGRRFDVTRERIRQIEA
KALRKLRHPSRSKKLKDYLE
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgagctatgaagaaggacatgaagataaaaaatttgaatatgtaaacgaattattggag
aaggcaaaaagtaaaggttccatatcatatagagaaatttcagattacctggagaatatt
gatatggataaggatcaaatggacgatctttacgattccttgatttccatgggtattgag
atcgtatccgaggttgatcctgacgattttgagatcattgctctggaacacgaagaagac
gtggatgtctcattggatgacataaatcttgagggtggcgaaatcgatcttgaggcaacg
ctgccaaagggaatcgcagttgatgaccccgttagaatgtacctgaaagaaatcggaaag
gttccgcttctttcggcagaagaggaaatcgaccttgcgaagctcatggaacagggggac
gacgaggcaaaaaaacgactctgcgaagccaacctcagattggtagtaagcattgctaaa
cgttacgtcggaagaggcatgctgttcctggatctgatccaggagggaaatttaggatta
attaaagcggtagacaaatttgactggagaaaaggatataaattcagtacatatgctacc
tggtggataagacaggccattaccagatccatagcggatcaggcaagaaccattcgtatt
ccggtgcatatggtggaaaccatcaacaaactgattcgtatctcaagacagctgcttcag
gagtatgggagagaacccactccggaagaaattgctgccgagatggatatttccgaggaa
aaggttcgggaaatactgaagattgcacaggaacctgtctctcttgaaacaccaatcgga
gaggaagaagacagccacctgggcgactttattcctgacgatgatgttccggcaccggca
gaagctgcggctttttccatgctgaaagagcagcttgttgaagtgctcgacaccctgacc
gacagagagcagaaggtactgaagctcagatttggtctggacgacggacgtgcgagaacg
ctggaggaagtaggcagacggtttgacgtcaccagagaacgaatccggcagatcgaggcg
aaggcacttagaaagctgcggcatccaagcagaagcaagaaattaaaggattatttggaa
tag
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integrated database retrieval system
