Actinospongicola halichondriae: AB8619_01915
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Entry
AB8619_01915 CDS
T11204
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ahai Actinospongicola halichondriae
Brite
KEGG Orthology (KO) [BR:
ahai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ahai03032
]
AB8619_01915 (topA)
03400 DNA repair and recombination proteins [BR:
ahai03400
]
AB8619_01915 (topA)
Enzymes [BR:
ahai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
AB8619_01915 (topA)
DNA replication proteins [BR:
ahai03032
]
Prokaryotic type
DNA Topoisomerases
AB8619_01915 (topA)
DNA repair and recombination proteins [BR:
ahai03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AB8619_01915 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
MacB_PCD
Motif
Other DBs
NCBI-ProteinID:
XQO38302
LinkDB
All DBs
Position
355254..357947
Genome browser
AA seq
897 aa
AA seq
DB search
MPTPSPSRPLVIVESPAKAKTISQFLGDDYIVEASVGHIRDLPSKGLSIDVDSDFKTDYE
INPDKRDVIKRLKALLKDADELYLATDEDREGEAIAWHLQEVLKPKVPVKRMVFHEITRG
AIEHAVENSRDIDYKRVDAQETRRIVDRLYGYPVSQIMWRKVNRGLSAGRVQSPAVRLVV
ERERERIAFVSADYWDLTAAFPTDPEFTAKLVALDGARVASGRDFGQDGQVTRADVAVVD
EARATDLKAGLEGQPYEVASVEEKPWRSRPKPPFMTSTLQQEGGRKLRMSASQIMRIAQG
LYEKGYITYMRTDSTTLSDTAVHAARTQVRELYGDDYVPAEPRTYKGKSKNAQEAHEAIR
PSGEAFKTPDELKAELRKDELALYDLIWKRTVASQMEDAVGRTISMRINADTVSREDATN
GSPSVRCTFGASGRVITFPGYLKAYVEDTDEEDERDDEERVLPNLSEGDALPDPALTADG
HSTSPPARFTEASLVKRMEELGIGRPSTYASIMGTIQDRGYVFKKGSALVPTWTAFAVVN
VLERQFGEYVDYAFTAKMEDDLDRIATGDEERVPWLHRFWFGDEATGRDGLGITVDEALE
KVDAAEVNTFPLGMDDNGQMVVAKPGRYGPYVKRGDDDTASIPEGLPPDELTLEKAIELL
AAPKGDVPIGEHPDSGLPVYVKTGRFGPYVQLGDFDTLGDDVKPKMESLFKDQKPEDVTL
EDALKLLSLPREVGIDEETGLPVLARNGRYGAYVSKGDEKGADSRSLESEEQIFTVTMER
AKALFAEPKRRRGQAAPKPPLRELGKDLVTEQPVVVKDGRFGPYVTDGETNASLKKGDLV
EEITIERASELLQIRRETAPKKKTAAKRKPAKKKASKKKSAAKKTAAKKKSATKKTT
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
gtgccgacaccctctccgtcgcgacctctggtcatcgtcgagtctcctgcaaaggccaag
acgatcagccagttcctcggtgacgactacatcgtcgaagcctccgtgggacacatccgc
gacctgccctcgaagggcctgtcgatcgacgtcgactccgacttcaagaccgattacgag
atcaaccccgacaagcgggacgtcatcaagcggctcaaagcgctgctgaaggatgccgac
gagctctatctcgcgaccgatgaggaccgcgagggcgaggccatcgcgtggcacctccaa
gaggtgctcaagcccaaggtcccggtcaagcggatggtgttccacgagatcacccgcggc
gccatcgagcacgccgtcgagaacagtcgcgacatcgactacaagcgggtcgacgcccag
gagacccgacgcatcgtcgatcgtctgtacgggtaccccgtcagccagatcatgtggcgc
aaggtgaaccgtggcctctcggcgggtcgtgtgcagtcgccggccgtccgtctcgtggtc
gagcgtgagcgtgagcgcatcgcgttcgtcagcgccgactactgggacctgaccgcggcg
ttccccaccgaccccgagttcacggccaagctggtcgcgctcgacggtgcccgtgtcgcc
agcggacgtgacttcggtcaggacgggcaggtcacccgggccgacgtcgccgtggtcgac
gaggcccgtgccaccgacctgaaggctggtctcgaggggcagccctacgaggtcgcctcg
gtcgaggagaagccctggcgcagtcgccccaagccgccgttcatgacgtcgaccctccag
caggagggcggtcgcaagctccggatgtcggccagccagatcatgcgcatcgcgcagggc
ctgtacgagaagggctacatcacctacatgcgtaccgacagcacgacgctgtcggacacc
gcggtccatgcggctcgcacccaggtccgcgagctctacggcgacgactacgtcccggcc
gagccccgtacctacaagggcaagtcgaagaacgcccaggaggcgcacgaggccatccgt
ccgtcgggtgaggcgttcaagacccccgacgagctcaaggccgagctgcgcaaggacgag
ctcgctctctacgacctcatctggaagcgcacggtcgcctcgcagatggaggacgcggtc
ggccgcacgatctcgatgcggatcaacgccgacaccgtgtcccgggaagacgcgaccaac
ggatcgccgtcggtgcggtgcaccttcggtgccagcggccgcgtcatcaccttccccggc
tatctcaaggcctacgtcgaggacaccgacgaggaggacgagcgcgacgacgaggaacgg
gtgctcccgaacctctccgagggcgacgccctcccggaccccgcgctgaccgccgacggc
cactcgacaagcccgcccgcacgcttcaccgaggcatcgctcgtgaagcgcatggaggaa
ctcgggatcggtcgtccctcgacgtacgcgtcgatcatgggcacgatccaagaccgcggc
tacgtcttcaagaagggctcggcgctcgttccgacgtggaccgccttcgccgtagtcaac
gtgctggagcgccagttcggcgagtacgtcgactatgccttcaccgccaagatggaggac
gacctcgaccgcatcgccaccggcgacgaggaacgcgtgccctggttgcaccgcttctgg
ttcggcgacgaggcgaccggtcgcgacggcctcggcatcaccgtggacgaggcgctcgag
aaggtcgacgccgccgaggtcaacaccttccccctgggcatggacgacaacggccagatg
gtcgtcgccaagcccggccgctacggcccctacgtgaagcgtggcgacgacgacaccgcg
tcgattcccgaagggctcccgcccgacgagctcaccctcgagaaggcgatcgaactgctg
gccgcacccaagggcgacgtgccgatcggcgagcaccccgactcggggctgcccgtctac
gtcaagaccggtcgcttcggtccctacgtgcagctcggcgacttcgacaccctcggtgac
gacgtcaagccgaagatggagtcgctgttcaaggaccagaagcccgaggacgtcacgctc
gaggacgccctcaagctgttgtcgctgccccgcgaggtgggcatcgacgaggagaccggt
ctcccggtcctggcccgcaacggtcgctacggcgcctatgtctccaagggcgacgagaag
ggcgccgactcgcgctcgctcgagtcggaggagcagatcttcacggtcacgatggaacgc
gcgaaggcgttgttcgccgaaccgaagcgccgtcgcggtcaggcagcccccaagccgccg
ctgcgcgagctgggcaaggacctcgtcactgagcagcccgtcgtcgtcaaggacggccgc
ttcgggccctacgtgaccgatggcgagaccaacgccagcctcaagaagggtgatctcgtc
gaggagatcacgatcgagcgtgcatcggagctgctccagatccggcgcgagaccgccccg
aagaagaagacggcggccaagcgcaagccggccaagaagaaggcctcgaagaagaagtcg
gccgccaagaagactgcggccaagaagaagtcggcgaccaagaagacgacgtga
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