Actinospongicola halichondriae: AB8619_05005
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Entry
AB8619_05005 CDS
T11204
Name
(GenBank) RNA polymerase sigma factor RpoD/SigA
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
ahai Actinospongicola halichondriae
Brite
KEGG Orthology (KO) [BR:
ahai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ahai03021
]
AB8619_05005
Transcription machinery [BR:
ahai03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AB8619_05005
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
XQO38893
LinkDB
All DBs
Position
complement(979720..980661)
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AA seq
313 aa
AA seq
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MSPAARATRSGESDEDIVRLYLNDIGRHALLTKEDEARLGALVQAGVDARERLAAEEDVT
PAEKAKMRRQVRAGDRATEQFVNANLRLVVSIAKKYHRTELPLLDLIQEGNLGLIHAVEK
FDHRKGFKFSTYATWWIRQAITRGVANTARTIRLPVHAHDLLKQIDKARGMLESKLGRPP
TLEELSVEVGHPPAKIEEILASARIAKSLDDGLSDDGDMTLGDLAAVAEDDPEGDAVTEA
TRGDVLAGLKGLDDREQRILILRYGLDGHEPRTLDEVGRHFDLTRERIRQIEARAMSKLR
HPANAGILADLAS
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
gtgagccccgcagcacgcgccacacgttcgggtgaatccgacgaagacatcgtccggttg
tacctgaacgacatcgggcgccatgcgctcctgaccaaggaagacgaggcccgtctcggc
gccttggtccaggcaggtgtcgacgcccgcgagcgccttgccgccgaagaggacgtgacg
ccggccgagaaggccaagatgcgccgccaggtccgcgccggcgatcgagccaccgagcag
ttcgtcaacgcgaacctccgcctcgtcgtctccatcgcgaagaagtaccaccgcaccgaa
ctgccgctgctggatctcatccaggagggcaacctcggcctgatccatgcggtcgagaag
ttcgaccaccgcaagggcttcaagttctccacctacgcaacgtggtggatccgccaggcg
atcacccgtggtgtggccaacacggcccgcacgatccgcctgccagtgcacgcccacgac
ctgctcaagcagatcgacaaggcccgcggcatgctcgagtcgaagctcggccgcccgccg
accctcgaggaactcagcgtcgaggtcggccacccgccggccaagatcgaggagatcctc
gcatcggcccgcatcgccaagtcgctcgacgacggcctgtccgatgacggcgacatgacg
ctcggcgacctcgccgccgtcgccgaggacgatcccgagggcgatgcggtcaccgaagcc
acccgtggcgacgtgctcgccggtctcaagggcctcgacgaccgcgaacagcgcatcctg
atcctgcgctacggcctcgacggccacgagccccgcaccctcgacgaggtcggccgtcac
ttcgacctgacccgcgagcgcatccgccagatcgaggcgcgcgccatgtcgaagctgcgg
cacccggccaacgccggcatcctcgccgacctcgcttcgtag
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