Actinospongicola halichondriae: AB8619_13895
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Entry
AB8619_13895 CDS
T11204
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ahai Actinospongicola halichondriae
Pathway
ahai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ahai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB8619_13895 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ahai03021
]
AB8619_13895 (rho)
03019 Messenger RNA biogenesis [BR:
ahai03019
]
AB8619_13895 (rho)
Transcription machinery [BR:
ahai03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AB8619_13895 (rho)
Messenger RNA biogenesis [BR:
ahai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AB8619_13895 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
OB_RNB
AAA_22
Spore_III_AA
AAA_19
DnaB_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
XQO36756
LinkDB
All DBs
Position
complement(2818375..2820033)
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AA seq
552 aa
AA seq
DB search
MSVEAERETLERKDRDELQKIAGALGGKVTSRTRKADIIEQILELTGVTDAGSDSSPAPE
SKPDDEPKAENKPQPKPEQRNGQQNDQNKPRNGGSAVQSDTDSGKKDSGKNDAGKKDNDK
DASQTNGQNNGQNGQDQGGNDDGEGGRRRRRRGRNREGGPQQDEFTGEPIPVSGCLDLRD
DGYGFLRVEGLLPSKDDCYVSVKQVRQFGLRKGDIVAGGSRPAFRNEKNPAILRIDSVND
VAVDESTVAERPLFEELAAVFATEALTLTVDGDAETTTTRALELLAPIGKGSRVLLAAPP
RSGKTTMLQTLARSIEANESDTSLIVVLLDERPEEITEMQRFVAAGTVYGSAFDAEPEDH
LALVDLALARARRMAEAGDDVVVLVDGLTRLARADQASPHGSQNGGRSLGGLDNSAIQAA
KRAFGAGRNLEDAGSVTLVATVAVDTGAAVDEAVYEAVLGAATTQIRLDRSAAERRTFPA
IDVGQTSTRREELLVGDDGASARDALRRVLAAQPDASSADNADGLDTLINRLRDMPSNDD
VLGAVAKEEKSR
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaagctgagcgcgagacgctcgaacgcaaggatcgcgacgagctgcagaag
atcgctggcgcccttggcggcaaggtgacctcccgcacccgcaaggccgacatcatcgag
cagatcctcgagctgaccggtgtcaccgacgccgggagcgactcgtcgccggcgccggag
tcgaagcccgacgacgagcccaaggccgagaacaagccccagccgaagcccgaacagcgg
aacggtcagcagaacgaccagaacaagccccgcaacggtggctcggctgtgcagtccgac
acggactccggcaagaaggattccggcaagaacgacgccggcaagaaggacaacgacaag
gacgccagccagaccaacggccagaacaacggccagaacggtcaggaccagggcggcaac
gacgatggtgagggtggccgtcgtcgccgtcgccggggacgcaaccgtgagggtggtccc
cagcaggacgagttcaccggcgagccgatcccggtctccggttgcctcgatctccgcgac
gacggctacggcttccttcgcgtcgagggactgctgccgtcgaaggacgactgctacgtc
tccgtcaagcaggtccgccagttcggcctccgcaagggcgacatcgtcgccggcgggtca
cgcccggccttccgcaacgagaagaacccggcgatcctgcgcatcgacagcgtcaacgac
gtcgcggtcgacgagagcacagtggccgaacggccgctcttcgaagagttggccgcagtc
ttcgcgaccgaggcgctcaccttgaccgtcgacggcgacgccgagacgaccacgacccgg
gccctcgagttgctcgctccgatcggcaagggaagccgcgtcctgctcgccgccccgccc
cggtcgggcaagacgacgatgctccagaccctcgcccgatcgatcgaggcgaacgagtcc
gacacctcgctgatcgtggtgctcctcgacgagcgtcccgaggagatcaccgagatgcag
cgcttcgtcgctgccggcacggtctacggctcggccttcgacgccgagcccgaagaccac
ctcgcgctggtcgacctcgccctcgctcgtgcccgccgcatggccgaagccggcgacgac
gtcgtcgtgttggtcgacggtctcacccgcctcgctcgtgccgaccaggcgtcgccgcac
ggaagccagaacggcggccgctcgctcggggggctcgacaacagcgccatccaggccgcg
aagcgtgccttcggtgccggacgcaacctcgaggacgccggttcggtgaccctggtcgcg
accgtcgccgtcgacaccggtgccgccgtcgacgaggccgtgtacgaggccgtgctcggc
gccgccacgacgcagatccgcctcgaccgctccgccgccgagcgccggacgttcccggcg
atcgacgtcggtcagacgtcgacgcggcgtgaagaactcctcgtcggtgacgacggggcc
agcgcacgagacgccctccggcgcgtcctcgccgcacagccagacgcttcgagtgcggac
aacgcggacggactcgatacgctgatcaaccgcctccgagacatgccgtcgaatgacgat
gtgctcggcgcagtggccaaagaggagaagtcccgatga
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