Actinospongicola halichondriae: AB8619_14800
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Entry
AB8619_14800 CDS
T11204
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ahai Actinospongicola halichondriae
Brite
KEGG Orthology (KO) [BR:
ahai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ahai03019
]
AB8619_14800 (hrpA)
Enzymes [BR:
ahai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AB8619_14800 (hrpA)
Messenger RNA biogenesis [BR:
ahai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AB8619_14800 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
WHD_HA2
AAA_19
AAA_25
nSTAND_NTPase5
T2SSE
AAA_30
nSTAND3
NACHT
SLFN-g3_helicase
DUF3563
Motif
Other DBs
NCBI-ProteinID:
XQO36930
LinkDB
All DBs
Position
complement(3003745..3007467)
Genome browser
AA seq
1240 aa
AA seq
DB search
MDFTTPDLPISLRKDELLEVIDAHQVVIVAGETGSGKSTQLPKFCLELGRGRAGLIGHTQ
PRRIAARAVAERVAEELGVSLGEEVGYAVRFTDKVGKRTLLKVMTDGILLNELQRDRDLT
KYDTIIVDEAHERSLNIDFILGYLRQLLPRRPDLKVIVTSATIDTERFAAHFAGVAGNGD
GPAPIVEVSGRTFPVELRYRPPEDDDTVAAVTDAVRELLDEQMGDVLVFQSGEREIRDTA
EAVEGLKLANTEVVPLYARLSSAEQHRVFASHTKRRVVIATNIAETSLTVPGIRSVVDPG
TARISRYNKRTKVQRLPIEPISQASADQRAGRCGRVAPGVCIRLFEEDDLVDRPEFTEPE
ILRTNLASVILQMTALGLGDVESFPFVEPPDRRNIADGVALLEELGALQTGRPAHDRRLT
QLGRRLARLPVDPTLGRMVLEAGRNGCVHEVMVIAAALSIQDVRERPVGKEQQAAESHAR
FRVPGSDFLGMLALWDHLKARQKALGSGAFRRECKAEYLHFVRLREWQDVYTQLRQVVRS
LKLEINTTPSDEHAIHRSLLAGLLGNVGARDEEQAERGPAEFIGVRNARFAIGRGSALSK
KPPKWVMAAELVETNRMWARTAATVQPQWIEHAARHLVKSTYGEPWWNQERGTAQVIERV
QLRALTLVEGRAVDVGRIDPERARELFVLHALVRGEWETHHRFVAHNRARIDEVRSMEDR
ARRRDLLIDEDAVFDFFDARVPDDITDVRRFDRWWRDEIGVHPALLDLSVDDLLATDDGV
DDEAFPTTWSVGESGGTRIEVPVDYSFQPGDVRDGAIFEIPVAVLNRTDPSPFEWLVPGL
RLELVTAMIRALPKAVRRHLAPAPDRAAEAHQSIDPSDGPFRVVLAKTLTRLAGVEIVPS
MWDGVELPSHLRPWFRVTGDEGLLAEGDDLDDLERRLRAHVRSTVVAESPDMERDGITDW
SIGTLPRSITSDVGGLTVEGYPSLVDLRDSVGVRVLASTSEQQALHWNGTRRLLKLQLPR
PARTVQGALDAHTMLGLVTAPHGSVSAAVDDALDAVLDAILLDHGGPVWDEESFSRLLAD
TRDRYVDELVEAVRCMAVAVQHVGQLHERLARPAPIEWSAALDDITTQVRHLVFDGMAVS
IGTERLVDIPHYLDAVDVRIDKLREGVRADHERMAIVHRVVTEHASLVAEVGLTAALDDI
RWMIEDLRVQQFAQHLGTRSPVSAQRIRRALDRVRRDTMG
NT seq
3723 nt
NT seq
+upstream
nt +downstream
nt
atggacttcacgacgcccgatctcccgatctcgctccgcaaggacgagttgctcgaggtc
atcgacgcgcaccaggtcgtgatcgtggcgggcgagacgggttcgggcaagagcacacag
ctccccaagttctgtctcgagctggggcgtgggcgcgccggcctcatcgggcacacccaa
ccccggaggatcgccgcgcgagccgtggccgaacgcgtcgccgaggaactgggcgtctcg
ctgggcgaagaggtggggtacgccgttcgtttcaccgacaaggtggggaagcggaccctc
ctcaaggtcatgaccgacggcatcctgctgaacgagctgcagcgtgaccgtgacctgacg
aagtacgacacgatcatcgtcgacgaggcccacgagcggagtctcaacatcgacttcatc
ctcgggtatctccgccaactgctgccccggcgacccgacctgaaggtgatcgtcacctcg
gccacgatcgacaccgagcggttcgccgcgcacttcgccggcgtcgcgggaaacggcgac
gggcctgcaccgatcgtcgaggtctcgggccgcaccttcccggtcgagctccggtaccgg
cctcccgaggacgacgacaccgtggcggcggtgaccgacgcggtgcgcgagctgctcgac
gagcagatgggcgacgtgttggtcttccagtcgggcgagcgggagatccgtgacacggcc
gaggcggtcgagggactgaagctggcgaacaccgaggtcgttcccctgtacgcccggttg
tcgtcagccgagcagcaccgcgtgttcgcgtcgcacacgaagcgccgtgtcgtgatcgcg
accaacatcgccgagacctcgctcacggttcccgggatccggtcggtggtcgacccgggc
acggctcgcatctctcgctacaacaagcggaccaaggtgcagcgtctgccgatcgagccg
atctcccaggcgtcggccgaccagcgcgctggtcgctgtggccgagtggcccccggcgtc
tgcatccgactcttcgaggaggacgacctcgtcgaccggcccgagttcaccgagcccgag
atcctgcgcaccaacctcgcgtcggtcatcctccagatgaccgccctgggtctcggcgac
gtcgagtcgttcccgttcgtcgaaccgcccgaccgtcgcaacatcgccgacggcgtggcg
ctgctcgaggaactcggcgccctccagaccggccgtcctgcgcacgaccgccggctcacg
cagctggggcgccgcctggcccgactccccgtcgacccgacgctcggccgcatggtgctc
gaggccggccgcaacggctgtgtccacgaggtcatggtcatcgccgcggcactctcgatc
caggacgtccgcgaacggccggtcggcaaggagcaacaggccgccgagtcgcatgcccgg
ttccgggtgccgggttcggacttcctcgggatgctcgcactctgggatcacctgaaggca
cggcagaaggcgctgggctcgggagcgttccgacgcgagtgcaaggccgagtacctccac
ttcgtccgcctccgggaatggcaggacgtctacacgcagctccgtcaggtggtccggtcg
ctgaagctcgagatcaacaccacgccgagcgacgagcacgccatccaccgttcgctgctc
gccggactgttgggcaacgtgggggctcgcgacgaggagcaggccgagcggggaccggcg
gagttcatcggcgtacgcaacgcccggttcgccatcggacgcgggtcggcgctctcgaag
aagccgcccaagtgggtcatggccgccgagttggtcgagaccaaccggatgtgggcccgc
accgctgccaccgtccagccccagtggatcgaacacgcggcccgccacctcgtgaagtcg
acctacggcgagccgtggtggaaccaggagcgggggaccgcacaggtgatcgaacgggtc
caactccgcgcgctgaccctggtggagggacgagcggtcgacgtcggccggatcgacccc
gagcgagcgcgtgagctgttcgtcctgcatgccctggtgcgtggcgagtgggagacgcac
caccgattcgtcgcacacaaccgggcgcggatcgacgaggtccgctcgatggaggatcgg
gcacgtcgccgcgatctcctgatcgacgaggacgcggtcttcgacttcttcgacgcccgt
gtccccgacgacatcaccgacgtccgtcgtttcgaccgatggtggcgcgacgagatcggc
gtgcatccggcgctgctcgacctctcggtcgacgatctcctcgccacggacgacggagtc
gacgacgaggccttccccacgacgtggtcggtgggggagtccggcggcacgaggatcgag
gtcccggtcgactactcgttccagcccggtgacgtgcgcgacggcgcgatcttcgagatc
cccgtcgccgtcctgaaccggaccgacccgtcgccgttcgagtggttggtgcccggtctc
cggctcgagttggtgaccgccatgatccgggcgctgccgaaggccgtccgccgccacctg
gccccggcgccggatcgagcagccgaggcgcaccagtcgatcgacccgtcggacggaccg
ttccgcgtcgtcctggccaagacgctcacccggctcgccggggtcgagatcgtcccgtcg
atgtgggacggcgtcgaactgccctcgcacctgcgcccgtggttccgggtgaccggtgac
gagggcctactggccgagggcgacgacctcgacgacctcgagcggcggctgcgtgcgcac
gtgcggtcgaccgtggtcgcggagtcgccggacatggagcgcgacgggatcaccgactgg
tcgatcggcacgctgccgcggtccatcacctccgacgtgggtggcctcacggtcgagggc
tatccgtcgctggtcgacctgcgcgactcggtgggcgtgcgggtcctcgcgtcgacgagc
gagcagcaggcgctgcactggaacggcacccgccgtctcctcaagctgcagttgccccgc
ccggcccggacggtccagggagcactcgacgcccacacgatgctgggtctggtcactgcg
ccccacggctcggtctcggccgcggtcgacgacgcgctcgatgccgtgctcgacgcgatc
ctcctcgatcacggcggccctgtctgggacgaggagtcgttctcgcggctgctcgcggac
acccgtgaccgttacgtcgacgaactggtcgaggccgtccgttgcatggcggtcgcggtg
caacacgtcgggcagttgcacgagcgtctggcccggcccgcgccgatcgagtggtcggca
gcgctcgacgacatcacgacccaggtccggcacctggtcttcgacggcatggcggtgagc
atcgggaccgagcgtctcgtcgacatcccccactacctcgacgccgtcgacgtacggatc
gacaagctccgcgagggtgtgcgcgccgaccacgagcggatggcgatcgtccaccgagtg
gtgaccgagcacgcatcgctcgtcgccgaggtgggcttgactgcggcgctcgacgacatc
cggtggatgatcgaggacctgcgggtccagcagttcgcgcagcacctcggcacccggagc
ccggtgagcgcccagcgcatccgtcgcgccctcgaccgggtccgacgcgacaccatgggg
tga
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