Actinospongicola halichondriae: AB8619_15980
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Entry
AB8619_15980 CDS
T11204
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
ahai Actinospongicola halichondriae
Pathway
ahai03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ahai00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AB8619_15980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ahai03021
]
AB8619_15980
03400 DNA repair and recombination proteins [BR:
ahai03400
]
AB8619_15980
Enzymes [BR:
ahai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AB8619_15980
Transcription machinery [BR:
ahai03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AB8619_15980
DNA repair and recombination proteins [BR:
ahai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AB8619_15980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_XRCC3_RpoA
RNA_pol_L_2
HHH_5
AMIN-like
Motif
Other DBs
NCBI-ProteinID:
XQO37157
LinkDB
All DBs
Position
complement(3245100..3246038)
Genome browser
AA seq
312 aa
AA seq
DB search
MLVIQRPTVEPIGDEEGNRQRFAITPLEPGFGHTIGNSLRRVLLSSIPGAAVTQVRFDEA
LHEFDTIGGVVEDVTDIILNLKDLVVVCHSDDPVTLRLDISGPAIVKGSDLSENADVEIL
NPDLQIATMNGSGRLAIDVTVAQGRGYVSAERNKSSDTIGVIPVDSIFSPVRKATFSVEP
TRVEQDTNYDRLVIDIQTDGSISPADALASAGDTLRSLVGLIADMSEEPQGLELGEVATV
GSGPSDLDQPIEDLELSERPRNCLKRAQVNSIGELLDKSEDDLLAITNFGQKSLDEVVEK
LDERGLTLRIRG
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atgctggtcatccaacgccccaccgtcgagcccatcggtgacgaagagggcaaccgtcag
cggttcgccatcactccgctcgagcctggcttcggccacaccatcggcaactcgctccgg
cgtgtgctgctgtcgtcgatccctggcgcggccgtcacccaggtccgcttcgacgaggcg
ctccacgagttcgacaccatcggcggcgtcgtcgaagacgtcaccgacatcatcttgaac
ctcaaggatctcgtcgtggtctgccacagcgacgatccggtcacgctccgcctcgacatc
agcggcccggcgatcgtcaagggctcggacctgtccgagaacgccgacgtcgagatcctc
aacccggatctccagatcgcgacgatgaacggcagcggccgcctggcgatcgacgtcacc
gtcgcgcagggtcgtggctacgtctcggccgagcgcaacaagtcgagcgacaccatcggg
gtcatcccggtcgactccatcttctcgccggtgcgcaaggcgacgttcagcgtcgagccg
acccgcgtcgagcaggacaccaactacgaccgtctggtcatcgacatccagaccgacggt
tcgatcagccccgcagacgccctggcctcggccggcgacaccctgcggagcctcgtcggc
ctcatcgccgacatgagcgaggagccccagggcctcgagctcggcgaggtcgccacggtg
ggctccggcccgtccgatctcgaccagcccatcgaggacctcgaactgtccgagcgtccc
cgcaactgcctcaagcgtgcgcaggtcaactccatcggagaactcctcgacaagtccgag
gacgacctgctcgccatcaccaacttcggtcagaagtctctcgacgaggtcgtcgagaag
cttgatgagcgcggcctcacgctgcgtatccgcggctga
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