Actinospongicola halichondriae: AB8619_16205
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Entry
AB8619_16205 CDS
T11204
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ahai Actinospongicola halichondriae
Pathway
ahai03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ahai00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AB8619_16205 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ahai03021
]
AB8619_16205 (rpoC)
03400 DNA repair and recombination proteins [BR:
ahai03400
]
AB8619_16205 (rpoC)
Enzymes [BR:
ahai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AB8619_16205 (rpoC)
Transcription machinery [BR:
ahai03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AB8619_16205 (rpoC)
DNA repair and recombination proteins [BR:
ahai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AB8619_16205 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
XQO37201
LinkDB
All DBs
Position
complement(3275417..3279343)
Genome browser
AA seq
1308 aa
AA seq
DB search
MLDVNNFDQLRIGLATAESIRMWSNGEVKKPETINYRTLKPEKDGLFCEKIFGPTKDFEC
ACGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVVHIWYLRGTRSWLAYLLSG
TEAREELKAKQLEKVIYFAANLVTWVDHDKLHEDLPNIEAELAGEREAIEKEREVEIADR
YEELEGEIKGLENDGAPDKDINARRKAAEKDIAIIREQFDGELDLLQRSFDELKELHSRK
IIEDEMLWRELTDRYGDYFEGGMGADALRRLIDRIDFDVEEVELTTNINPPEGQKPLSQQ
RKQKAIKRLKIVAAFNRRDEHGKRVNDPGAMILEVVPVIPPELRPMVQLDGGRFATSDLN
DLYRRVINRNNRLKRLLDLGAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRALKS
LSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPTLRLHQCGLPKLMALELFKPFVMKALV
DRELAQNIKSAKRMVERRRAQVWDVLEEVIKEHPVMLNRAPTLHRLGIQAFEPVLVEGKA
IQIHPLVCTAFNADFDGDQMAVHLPLSAEAQAEARVLMLSANNILSPANGRPLVTPTQDM
VIGAFYLTSLMDGEKGEGQVFGDIDTINRAYESDEITLHTKIQYRVGRDDEGKAEWITTT
PGRVMFNETLPERYEFLNERVSKKELSAIVDELAKNYSKAEVAEALDNIKDLCFKFAMRS
GVTISIDDVKTPPEKRDILDQYEAEADKVETQFRRGIITDGERRQKEVEIWTNATEEVRA
KMEIGLKAERFNPIDMMVGSGARGNMMQVRQIAGMRGLVANPRGDMIPRPIKSNFREGLD
MLEYYIATPGARKGLVDTALRTADSGYLTRRLVDVAQELIVNDDDPFDRAERTGTPIRSI
WIENIKPDLPNRRFYMETKILGRVLAEDVTLASGTIERGTMVTQEMMQEMIADENVDRAR
VLSPLTDDSEQGISGLAYGMSLATGIAIERGEAVGVIAAQSIGEPGTQLTMRTFHTGGVT
GSGGDIAGGLPRVVELFEARSPKGKATMSTVSGVVRILEDEGRGKTVLVVTDDGEEASFP
IPVGARIEVAEGAEIRAGDAIVEGPRDPKELLEIKGLRHTQTYLVDEIQKVYRDQGVSIH
DKHIELIVRQMTRRVHINESGDSPFLPGERIDRRRYTEVNKQLILEGKTPAEARDEIMGI
TKASLSTDSWLSAASFQETTRVLTEAAIESKSDGLVGLKENIIIGKLIPAGTGHGDYREV
DTEAPEYKQMEGWSSDQDDDDPAAMLAGAFDSQSGAEVIDIKSGEAAG
NT seq
3927 nt
NT seq
+upstream
nt +downstream
nt
atgcttgacgtcaacaacttcgatcagctccgcatcgggctggccaccgcggagtccatc
cgcatgtggtccaacggtgaggtcaagaagccggagaccatcaactaccggacgctcaag
cccgagaaggacggactcttctgcgagaagatcttcggtccgaccaaggacttcgagtgc
gcgtgcggcaagtacaagcgtgtccgtttcaagggcatcatctgtgagcgctgtggcgtc
gaggtcacccgttcgaaggtccggcgcgagcgcatgggccacatcgagctggccgccccg
gtcgtccacatctggtacctgcgcggtacccgctcgtggctcgcctacctcctgtcgggc
accgaagcccgcgaggagctgaaggccaagcagctcgagaaggtcatctacttcgcggcg
aacctggtcacctgggtcgaccacgacaagctccacgaagacctccccaacatcgaggcc
gagctcgccggtgagcgagaggccatcgagaaggagcgcgaggtcgagatcgcggaccgc
tacgaggagctcgagggcgagatcaagggcctcgagaacgacggcgctcccgacaaggac
atcaacgcccgccgcaaggccgccgagaaggacatcgcgatcatccgcgagcagttcgac
ggcgagctggacctgctccagcgttccttcgacgagctcaaggaactgcactcccgcaag
atcatcgaagacgagatgctctggcgtgagctgaccgaccgctacggcgactacttcgaa
ggtggcatgggcgccgacgcactgcgtcgtctcatcgaccgcatcgacttcgacgtcgaa
gaggtcgagctcaccaccaacatcaacccgcccgagggtcagaagccgctcagccagcag
cgcaagcagaaggccatcaagcggctcaagatcgtcgcggccttcaaccgtcgcgacgag
cacggcaagcgggtcaacgacccgggcgccatgatcctcgaggtcgtcccggtgatcccg
cccgagctgcgaccgatggtccagctcgacggtggccgcttcgcgacctccgacctcaac
gacctctaccgccgggtcatcaaccgcaacaaccgcctgaagcgtctgctcgatctcggt
gcgcccgagatcatcgtgaacaacgagaagcgcatgctccaggaggccgtcgacgcgctg
ttcgacaacggtcgtcgtggccgcccggtcacgggccccggcaaccgcgccctcaagtcg
ctgtccgacatgttgaagggcaagcagggccggttccgtcagaacctgctcggcaagcgc
gtcgactactcgggccgttcggtcatcgtggtcggcccgacgctgcgtctccaccagtgc
ggcctccccaagctgatggcgctcgagctgttcaagcccttcgtcatgaaggcgctcgtc
gaccgtgagctggcgcagaacatcaagtcggccaagcgcatggtcgagcgccgtcgtgcc
caggtgtgggatgtcctcgaagaggtcatcaaggagcacccggtcatgctcaaccgtgcc
ccgacgctccaccgcctgggcatccaggccttcgagccggtgctggtcgagggcaaggcc
atccagatccacccgctggtctgcaccgcgttcaacgccgacttcgacggcgatcagatg
gccgtgcacctgccgctgtcggccgaggctcaggccgaggcccgcgtgctgatgctcagc
gccaacaacatcctgtcgccggccaacgggcgtccgctcgtcacgccgacccaggacatg
gtgatcggcgccttctacctgacctcgctcatggacggcgagaagggcgaaggccaggtc
ttcggtgacatcgacacgatcaaccgggcctacgagtccgacgagatcacgttgcacacc
aagatccagtaccgcgtgggacgcgacgacgagggcaaggccgagtggatcaccacgacg
cccggccgcgtcatgttcaacgagacgctccccgagcgctacgagttcctcaacgagcgt
gtctcgaagaaggagctctcggcgatcgtcgacgagctggccaagaactactccaaggcc
gaggtggccgaggcgctcgacaacatcaaggacctctgcttcaagttcgcgatgcgctcg
ggcgtcaccatctccatcgacgacgtcaagacgccgccggagaagcgcgacatcctcgac
cagtacgaggccgaggccgacaaggtcgagacccagttccgtcggggcatcatcaccgac
ggtgagcgccgccagaaggaggtcgagatctggacgaacgccaccgaagaggtacgcgcc
aagatggagatcggcctcaaggcggagcggttcaacccgatcgacatgatggtcggctcg
ggcgctcgaggaaacatgatgcaggtccgccagatcgcgggcatgcgtggcctcgtggcc
aaccctcgtggcgacatgatcccccgcccgatcaagtcgaacttccgcgagggactcgac
atgctcgagtactacatcgccacgccgggcgcccggaagggtctggtcgacaccgccctc
cgtaccgccgactcggggtacctgacgcgccgtctcgtcgacgtcgcccaggaactgatc
gtcaacgacgacgacccgttcgaccgtgcagagcgcaccgggaccccgatccgctccatc
tggatcgagaacatcaagcccgacctgcccaaccgccgcttctacatggagaccaagatc
ctcggtcgcgtgttggcggaggacgtcaccttggccagcggcaccatcgagcgcgggacc
atggtcacgcaggagatgatgcaggagatgatcgccgacgagaacgtcgaccgggcgcgg
gtcctctcgcccctgaccgacgactcggagcagggaatctccggcctggcctacggcatg
tcgttggccaccggtatcgccatcgaacgcggcgaggccgtgggcgtcatcgctgcccag
tcgatcggtgagccgggtacccagctcaccatgcgtaccttccacaccggtggcgtcacc
ggcagcggcggcgacatcgccggcggtctgccccgcgtcgtcgagttgttcgaggctcgc
tccccgaagggcaaggcgaccatgtcgaccgtgtccggcgtggtgcggatcctcgaggac
gaaggccgtggcaagacggtcctggtggtcaccgacgacggcgaggaagccagcttcccg
atccccgtcggtgctcgcatcgaggtggccgaaggtgcggagatccgtgccggcgacgcc
atcgtcgaaggtccccgcgatccgaaggaactcctcgagatcaagggtctgcgtcacacg
cagacctacctggtcgacgagatccagaaggtctaccgggatcagggtgtgtcgatccac
gacaagcacatcgaactgatcgtgcgacagatgacccgccgggtccacatcaacgagtcg
ggcgactcgccgttcctccccggtgagcgcatcgaccgccgtcgctacaccgaggtcaac
aagcagctgatcctcgagggcaagacgccggccgaggctcgtgacgagatcatgggcatc
accaaggcctcgctctcgaccgactcgtggctctcggccgcctccttccaggagacgacc
cgggtcctcaccgaagcggcgatcgagtccaagtccgacggtctcgtcggcctcaaggag
aacatcatcatcggcaagctcatcccggccggtaccgggcacggtgactaccgcgaggtc
gacaccgaggcgcccgagtacaagcagatggagggctggtcgtccgaccaggacgacgac
gacccggcagcgatgctcgccggtgcgttcgactcccagtcgggtgccgaggtcatcgac
atcaagtcgggcgaagccgcaggctga
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