Alkalicoccus halolimnae: FTX54_000630
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Entry
FTX54_000630 CDS
T09800
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ahal
Alkalicoccus halolimnae
Pathway
ahal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ahal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FTX54_000630 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ahal03021
]
FTX54_000630 (rpoC)
03400 DNA repair and recombination proteins [BR:
ahal03400
]
FTX54_000630 (rpoC)
Enzymes [BR:
ahal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FTX54_000630 (rpoC)
Transcription machinery [BR:
ahal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FTX54_000630 (rpoC)
DNA repair and recombination proteins [BR:
ahal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FTX54_000630 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
WWD80108
UniProt:
A0A5C7FGE7
LinkDB
All DBs
Position
133680..137294
Genome browser
AA seq
1204 aa
AA seq
DB search
MIDVNNFEYMKIGLASSDKIRSWSRGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRSLEEVIYFASYVVTDTGDTPLELKQLLSEKEYRSYREKYGRTFNAEMGAEAIRKLLE
DIDLDKEANQLKEELETAQGQRRTRAIKRLEVIEAFRHSDNDPDWMVLDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLQMYQCGLPKE
MALELFKPFVMKELVSKGLAHNIKSAKRKVERVHPEVWDVLEEVIREHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSAEAQAESRLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLEREGAVGEGSRFSGPSEVMTAYQNGYVHLHTRIALP
VKSIDKDNFREEYEDHLILTSVGKVIFNEILPKSFPYVNEPTSDNLEIETPQKFFVPGET
DIKKEFENRELVAPFKKGFLGDIIAEVFKKFKISETSVMLDKMKDLGFYYSTKAGITIGV
SDIVVLKDKQDILDDAEEKVTKISKQFRRGLITEEERYDKVIEVWSKAKDVIQEKLLGTL
DKTNPIFMMSDSGARGNASNFTQLAGMRGLMANPSGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIIREEDCGTDRGLEVKAITDGAEVIEPLY
DRLVGRVSFQNLYHPETNELLVSRNEDISEDMAKVIDDAGIETVLIRSVFTCDTKHGSCK
KCYGRNLATGAEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEVF
EARNPKGQATISEIKGKVMDIKDNGDKKEILIQNDIESRTYQTLYGSRMKSEIGDEVRPG
QELTEGSIDPKELLTISGVHGVQEYLLREVQKVYRMQGVEIGDKHVEVMVRQMMRKVRVI
DAGDTNVLPGSLVEIHQFNDVNKDILLKGRRPATGLPVLLGITKASLETDSFLSAASFQE
TTRVLTDAAIKGKRDELVGLKENVIIGKLVPAGTGMQRYRQMKHIDTVEKNEGTMEEVTA
QEQE
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
ttgatagatgtaaataactttgaatatatgaaaatcggcctcgcttcctccgacaagatc
cgctcttggtcgcgcggggaagtaaaaaagccggagacgattaactatcgtactctaaag
ccggagaaagacggtctcttctgtgagcgtatcttcggcccgacaaaagactgggaatgt
cactgtggaaaatataagcgcgtacgctataaaggcgtcgtctgcgaccgctgcggtgtg
gaagttacacgcgcaaaagtccgcagggagcgcatggggcacattgaacttgctgcccct
gtttcccacatctggtacttcaaaggaattccgagccgtatgggtcttgtactcgatatg
tctccgcgttccctggaagaagtcatttacttcgcttcctatgtagtgactgacaccggc
gataccccgctggagctgaagcagcttctttctgaaaaagaataccgcagctaccgcgaa
aaatacggccgcacgttcaacgccgaaatgggcgctgaagcgatccgcaagctccttgaa
gacatcgatcttgataaagaagcgaatcagctgaaagaagagctggaaactgctcaggga
cagcgccgtacgcgtgcaattaagcgtcttgaagtcattgaagctttccgtcattccgat
aacgatccggactggatggtcctcgacgtgctcccggttattcctccggagcttcgtccg
atggtacagctcgacggcggacgttttgctacatccgacttaaacgatttatatcgacgt
gttattaaccgtaacaaccgtctgaagcgtctgctggaccttggtgctccaagcattatc
gttcagaacgagaagcgtatgcttcaggaagcagtagatgctcttatcgataatggccgg
cgcggccgtcctgttacaggaccgggtaaccgtccgcttaaatctctttctcatatgctg
aaagggaagcagggacgtttccgtcaaaaccttctcggtaaacgtgttgactattccggt
cgttccgttatcgtcgttggtccaaacctgcagatgtaccagtgtggacttccgaaagaa
atggcgctggagctgtttaagccattcgttatgaaagagcttgtcagtaaagggcttgcc
cacaacattaagagtgcgaagcgcaaagtagagcgcgtgcaccctgaagtgtgggatgtt
ttggaagaagtcatccgggagcatccggtattgttaaaccgggcaccaacacttcaccgt
ctcggtattcaggcatttgaaccgacgcttgtagaaggacgcgcaatcaagcttcacccg
ctcgtatgtacagcgtacaacgctgactttgacggtgaccagatggctgttcacgtgccg
ctttctgcagaagcgcaggcggaatcccgtctccttatgcttgcagcacagaatatcctg
aatccaaaagacggcaagccggtagtaacgccttcccaggacatggttttaggtaactac
tacttgacgcttgagcgcgaaggcgcagttggagaaggcagcaggttcagcggtccaagc
gaagtgatgactgcttatcagaacggctacgtgcatcttcatacacggattgccctgcct
gtaaaatctatcgataaagataacttcagggaagaatatgaagatcatttaattctcact
tccgtcggtaaagtcattttcaacgaaatccttccgaagtcattcccttatgtgaatgaa
ccgacgtcggacaacctggaaattgaaactccgcaaaaattcttcgtgccgggtgaaacc
gacattaaaaaagaattcgaaaaccgcgaactcgtggcgccgtttaaaaaaggcttcctc
ggcgatatcattgcggaagtatttaaaaagttcaagatttccgaaacatccgttatgctc
gataagatgaaggatcttggtttctactattctacgaaagccggtattacaatcggtgtt
tccgacattgtcgtactcaaagacaagcaggacatcctcgatgatgccgaagaaaaagtc
actaaaatttccaagcagttccgtcgtggtctgatcacagaagaggaacgttacgataaa
gttattgaagtgtggagtaaagcgaaagacgttatccaggagaagcttcttggaacactt
gataaaacaaaccctatcttcatgatgagtgactccggagcccgtggtaacgcctccaac
ttcactcagcttgcaggtatgcgtggtctgatggcaaatccatccggacgtattatcgag
cttccgatcaaatccagtttccgtgaaggtctgacagtacttgagtactttatttccaca
cacggtgcccgtaaaggtcttgcagatacggctctgaaaacggccgactcaggttatctg
acccgtcgactcgttgacgtagctcaggacgttattatccgtgaagaggactgcggaacg
gaccgtggacttgaagtaaaagccattacagacggcgcggaagttatcgaaccgctttac
gaccgcctcgtcggtcgtgtatccttccagaacctttatcatccggagacgaatgaactt
ctcgtttcacgaaatgaagatatttcggaagatatggcaaaagttatcgatgacgccggt
attgaaacagtgcttatccgttctgtcttcacgtgtgacacaaagcacggttcctgtaag
aaatgttacggacgcaacctggctacaggtgcagaagtggaagtcggggaagctgtcggt
attattgcagcccagtcgatcggtgagccgggtacccagcttacaatgcgtaccttccac
acaggcggtgtagccggagacgatattacccagggtctgcctcgtattcaggaagtattt
gaagcccgtaatccgaaaggtcaggcgactatttctgaaataaaaggtaaggtcatggat
attaaggataacggagacaagaaagaaatccttatccagaacgatattgaatcacggacg
tatcaaaccttgtacggctcccgtatgaaatcggaaatcggtgatgaagtaagaccgggt
caggaactgacagaaggttctattgatccgaaagaacttcttacaatttccggtgttcac
ggagtacaggaatacctgcttcgtgaagtacagaaagtttaccgtatgcagggtgttgaa
atcggcgataagcacgtggaagtcatggtccgccagatgatgcgcaaagtacgcgtgatt
gatgccggagatacaaacgttctcccaggctcactcgtggaaatccatcagtttaacgac
gtcaataaagatatccttcttaaaggacgccgtccggcaaccggactgccggtactgctc
ggtatcactaaagcttctctcgaaacagactctttcctttctgccgcatccttccaggaa
acgacacgtgtcctgactgatgcagcgatcaaaggcaagcgcgacgagctcgtcggactg
aaagagaatgttattatcggtaagcttgtaccagcaggaacaggtatgcagcgctaccgt
cagatgaagcacatcgatacggtagagaaaaatgaaggaacgatggaagaagtaacagca
caggagcaggaataa
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