Alkalicoccus halolimnae: FTX54_003845
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Entry
FTX54_003845 CDS
T09800
Symbol
sigB
Name
(GenBank) RNA polymerase sigma factor SigB
KO
K03090
RNA polymerase sigma-B factor
Organism
ahal
Alkalicoccus halolimnae
Brite
KEGG Orthology (KO) [BR:
ahal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ahal03021
]
FTX54_003845 (sigB)
Transcription machinery [BR:
ahal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FTX54_003845 (sigB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r3
Sigma70_r2
Sigma70_r4_2
GerE
HTH_23
IF2_N
HTH_28
HTH_3
HTH_AsnC-type
HTH_Tnp_ISL3
DUF1492
DUF134
Sigma70_ECF
NirdL-like_HTH
PhyR_sigma-like
TnsD
KORA
UPF0122
HTH_37
Zincin_1
DUF5004
Motif
Other DBs
NCBI-ProteinID:
WWD80713
UniProt:
A0A5C7FBJ9
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All DBs
Position
864426..865223
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AA seq
265 aa
AA seq
DB search
MAEEPQKNHQNTSEAKKRNLEKIAEFQETNDEALQTELVLEYENLVHALARKFSRGQRHD
EDLIQVGMIGLLAALRRFDPSFARSFESFAVPTIVGEIKRFIRDKTWSVHVPRRIKELGP
KIKAAVEDLTTTLQRSPSVHEIAEHLGVSEEEILETMEMGKSYQALSVDRSIEADDEGSA
VTLLDLVGQEEGGYEQTDQQLLLEKAFAVLTEREKQILQLTYFENMSQKETGEQLGISQM
HVSRLQRRALQKLRESIRIEATEAF
NT seq
798 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagaacctcagaagaatcaccagaacaccagtgaggcaaagaagcgcaacctg
gaaaagattgcggaatttcaggagacaaatgatgaagcgctgcagactgaacttgttctg
gaatacgaaaatctcgttcatgcactggcgaggaaattctcacgcggacagcggcacgat
gaagatctgatccaggtagggatgatcggtctgcttgctgcactccgccggtttgacccg
tcttttgcaagaagttttgaatcgtttgcagtcccgacgattgtcggggagatcaaacgg
tttatccgtgataaaacatggagtgttcacgtcccccggcgcattaaagaactcggtcct
aaaatcaaagccgctgtggaagacctgacgacgacgcttcagcgttctccgagcgtgcat
gaaatagcggaacatctcggcgtttcagaagaagaaattcttgaaacgatggaaatgggc
aaaagctaccaggctctgtccgtcgaccgctcgattgaagcggatgatgaaggcagcgct
gttactctgcttgatcttgttggtcaggaagagggcggctatgaacagacggatcagcag
ctccttctcgaaaaagcgttcgctgtgctcacggaaagagaaaagcagatactgcagctc
acatatttcgaaaacatgagccagaaagaaaccggggaacagctcggtatttcccagatg
cacgtatcaagactgcagcgccgtgccctccaaaaactccgtgaatccattcgaattgaa
gcaacggaggccttttaa
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