Alkalicoccus halolimnae: FTX54_005145
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Entry
FTX54_005145 CDS
T09800
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
ahal
Alkalicoccus halolimnae
Brite
KEGG Orthology (KO) [BR:
ahal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ahal03009
]
FTX54_005145 (rlmD)
Enzymes [BR:
ahal01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FTX54_005145 (rlmD)
Ribosome biogenesis [BR:
ahal03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FTX54_005145 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Cons_hypoth95
Methyltransf_25
TRM5-TYW2_MTfase
MTS
PrmA
Methyltransf_15
Methyltransf_11
RrnaAD
UPF0020
TPMT
TRM
Methyltransf_12
PCMT
Methyltransf_23
Motif
Other DBs
NCBI-ProteinID:
WWD80950
UniProt:
A0A5C7FJT1
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All DBs
Position
1169295..1170680
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AA seq
461 aa
AA seq
DB search
MSRQIPVQKNDYVRVTFEDLTHDGAGVAKVDGYPLFVKRALPGETGLIKVIHTKKNFGFG
RLTEIIKESKERTEPPCSIFNQCGGCQLQHLSYNGQLAYKQKQVQETMVRIGGLGNLTVH
PTLGMEEPWRYRNKSQVPVSEQNGKIAAGFYAERSHTIVDMEECLIQHEDADRAVRFVKQ
LAAEYGIRGYDDKTHKGQLRHVVIRHAQTTDQLMIVLITKDKTLPNKKHIIRRMKEEFPN
LVSLVHNVNPKRTNVIFGDQTEIMWGEGVIYDEIDNIRFAISPRSFYQINPLQTRVLYEK
ALEFARLTGKENVIDAYCGIGTISLFLARRAKHVYGVEVVPEAVTDAKENAKLNHIENAE
FYVGEAENIMPWWRAQGMNADVIVVDPPRKGCDEKLLQSIAEMTPERIVYVSCNPATLAR
DLKYLEEKGYEAKEVQPVDMFPHTTHVECVTWLEKKEVVEL
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgagcagacaaattccagtccagaaaaatgattatgtacgtgttacatttgaggactta
acacatgacggagcaggtgtagctaaagtagacggctatccgcttttcgtaaaaagagcg
cttccgggtgaaaccggtcttattaaagtaattcatacaaagaaaaatttcggtttcggc
cgtttaacggaaataattaaggaaagtaaagaacggaccgagccgccttgttcgatcttt
aatcagtgcggcggctgtcagctgcagcacctgagctacaatggccagcttgcctataaa
cagaagcaggtgcaggaaacaatggtccgtattggagggctgggtaatttaacagttcat
cctacgctcggaatggaggagccgtggagatataggaataaatcgcaggttccggtaagt
gaacaaaatggaaaaatagcagctgggttctatgcagagcggagccacacgatagtggat
atggaagagtgtctgattcagcatgaagatgcagaccgcgctgtcagatttgtgaaacag
cttgctgcggaatatggtatccgcgggtatgatgataagactcataaaggacagctgagg
cacgtcgtcatccgtcatgcccaaacgacagaccagctgatgattgtgctgattacgaaa
gacaaaacattaccaaataaaaagcatattatccggcggatgaaagaggaatttccgaac
cttgtttcgctcgttcataatgtgaatccgaaacggacgaacgttatttttggtgaccag
actgagattatgtggggagaaggcgtcatttatgatgaaattgacaacatccggtttgcg
atttctcctcgttccttttatcaaatcaatccgttacagacgagagtcctttatgaaaaa
gcgctggagtttgcgcggcttacgggaaaggaaaatgtgatcgatgcctactgcggtatc
ggcacgatcagtttgtttcttgcccgtcgagccaaacacgtttacggcgtggaagtagtg
cccgaggctgtaacggatgctaaagagaacgccaagcttaatcacatcgaaaatgctgaa
ttttatgttggtgaggcagaaaacattatgccatggtggcgcgcgcaggggatgaatgcg
gatgttattgtcgttgaccctccccgtaaaggctgtgatgaaaagctgctgcagtcaata
gcagaaatgaccccggagcggattgtctacgtttcctgcaacccggctacgctcgcacgt
gacctgaaatatctggaggaaaaaggctacgaagcaaaagaagtacagcctgtggatatg
ttcccgcatacaacccacgtggaatgtgtgacatggctggaaaagaaggaagtagtcgag
ttgtaa
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