Alkalicoccus halolimnae: FTX54_005540
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Entry
FTX54_005540 CDS
T09800
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
ahal
Alkalicoccus halolimnae
Brite
KEGG Orthology (KO) [BR:
ahal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ahal03009
]
FTX54_005540 (rlmD)
Enzymes [BR:
ahal01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FTX54_005540 (rlmD)
Ribosome biogenesis [BR:
ahal03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FTX54_005540 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
MTS
Methyltransf_25
PrmA
Cons_hypoth95
Methyltransf_11
UPF0020
Methyltransf_15
NARF
Methyltransf_32
Methyltransf_12
Ubie_methyltran
TehB
Motif
Other DBs
NCBI-ProteinID:
WWD81026
UniProt:
A0A5C7FFW0
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All DBs
Position
1263497..1264879
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AA seq
460 aa
AA seq
DB search
MSDTQKVTITKGQKFPLTIKRLGIDGEGVGFFKRQVVFVPGALPGEEIVCEVVKVSHKFA
AGRIVKIRKRSPDRMTAPCPFYDKCGGCQLQHLNYNGQLREKKDIVRQAFERYTKIPLES
IEFHDTLGMENPWRYRNKSQMQAGRVKNKVIAGLYERHSNRLLDIDECIVQHPQTDKVTN
IVKEIASDLRLTVYDTKKHKGFLRTIVTRTGFETGEYQLVIVTAEKDFPKKDLFIDEVKR
KLPDITSIVQNINTQKTPLVFGNETIVLSGKERIRESLNGMTFELSARAFFQLNPEQTKV
LYNAAKKAAHLTGKEKVIDAYCGTGTIGLWTSDLASEVRGMDVVEEAVADAKQNAERNGL
SHVSFETGTAESVIPRWEEEGWKADVVIVDPPRTGLDKKLLHTLIQSGPERIVYVSCNPS
TLAKNVTELSEGGYRLESLQPVDMFPQTSQVETIAALKKR
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatacacaaaaagtgacaataacaaagggacaaaagtttcctctaacgattaaa
aggctgggaattgacggagaaggtgtagggttttttaaaagacaggtagtgtttgtaccc
ggtgcccttccaggtgaagagatcgtttgtgaagtggttaaagtttcgcataaatttgcg
gcaggtagaattgtgaaaatacggaaacgttcccctgatcgcatgacagctccctgtcct
ttttatgataagtgtggaggctgccagctccagcatttaaattataatggccagctccgt
gaaaaaaaagatatcgttcgtcaggcatttgagcgttatactaaaattccactcgaaagc
atagagtttcacgatactcttggtatggaaaacccctggcgatatcggaataaaagccag
atgcaggccggccgggttaaaaataaagttattgccggcctgtatgagagacacagtaac
agacttcttgatattgatgaatgtatcgtgcagcatcctcaaacggataaagtaacaaac
atcgtaaaggagattgcttcagaccttcgtctaactgtttatgatacgaaaaaacataaa
ggttttctaagaactatcgttacccgcacaggctttgagacaggcgaatatcagcttgta
atcgttactgctgaaaaggatttccctaaaaaagatttgtttatagatgaagtgaaacga
aaactgccggatataacttccatcgttcaaaacataaatactcaaaaaacacccctcgtg
tttggaaacgaaacgattgtattaagcggaaaagaacgtatcagagaatcattgaacgga
atgacttttgaattatcagcccgggctttttttcaattgaaccctgaacagacgaaagtg
ctctataatgcggcaaagaaagcagcacatcttaccgggaaagaaaaagttattgacgct
tactgcgggacaggcacaataggtttatggacatcagaccttgcctcagaagtccgcggc
atggatgtcgtcgaagaggcggttgctgatgcaaaacaaaatgcagaaagaaatggtctg
agccacgtgagtttcgagacaggaacagcagaaagtgtcattccacgatgggaagaagaa
ggttggaaagcagatgttgttattgtcgatcctccgagaacaggattggacaaaaagctt
cttcatacactgatccaatcaggtccggaaagaattgtctacgtctcctgcaatccttcc
acactggcaaaaaacgtaacagaactttcggaaggaggttacagattggagagtctgcag
cctgtagatatgttcccgcagacttcccaggtggaaacaatcgctgctctaaagaagcgt
taa
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