Alkalicoccus halolimnae: FTX54_007085
Help
Entry
FTX54_007085 CDS
T09800
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
ahal
Alkalicoccus halolimnae
Brite
KEGG Orthology (KO) [BR:
ahal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ahal03019
]
FTX54_007085
03009 Ribosome biogenesis [BR:
ahal03009
]
FTX54_007085
Enzymes [BR:
ahal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FTX54_007085
Messenger RNA biogenesis [BR:
ahal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FTX54_007085
Ribosome biogenesis [BR:
ahal03009
]
Prokaryotic type
rRNA helicases
FTX54_007085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
SpoIISA_toxin
AAA_22
DUF1694
Motif
Other DBs
NCBI-ProteinID:
WWD81305
UniProt:
A0A5C7F8R5
LinkDB
All DBs
Position
1573068..1574357
Genome browser
AA seq
429 aa
AA seq
DB search
MKHNFERFNLQPYLIEALSRDGIEQPTEIQERLIPSIDRGIDVIGKSQTGTGKTLAFLLP
ILNNIDSEKQETQYIITAPTRELASQLYDVFHLYTEQTNITAQLIVGGTDRKRMADKVSH
KPHIVVGTPGRVLDMFRENAIQSNAIKGFVVDEADQMLDLGFLEEVNAIAAKLHDNVQLL
VFSATIPESLMPFLKKYMKQPKQVEVQPNTVSPKNIEHWLVYDRDRDRKEVLSKLTERIN
PFLAIIFANTKEAADEFYEVLQEKGLNVDILHGGIAPRKRKKVLKKLQDAEVQYLVATDL
LARGIDITGVSHIINAQIPHELDYYVHRVGRTARAGWDGKAITFYGRTDEASIAKLKQQG
IPFEYKEWKQGGWKTVDKRLDKRPQQTPAALPPKKKTTKVKPGYKKKARAKAEQEQKRER
RITRRKTKK
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgaaacacaattttgaaagatttaatttacagccatatttgatagaagctttatccaga
gatggtattgagcagcctacagaaatacaggaacggttgataccctctatagatagagga
atagatgtaattggtaaatcgcagacagggacagggaagacccttgcctttttgctgccg
attcttaacaatatcgattcagagaagcaggaaacgcagtatattattactgcgcctaca
agagaacttgcttcccagctgtacgatgtttttcatctgtacacagagcagacgaatatc
acagcacaactgatcgtcggaggaaccgatcgaaagcggatggctgataaagttagtcac
aaaccccatattgtagtcggtacgccgggacgtgttcttgatatgttcagagaaaacgcg
attcagtcgaatgcgataaagggatttgttgttgacgaagccgatcagatgctggatctc
ggttttttagaagaagtaaatgctattgctgcaaaactgcacgataatgtgcagcttctg
gttttttctgcaacgattccggaaagtctcatgccgttcctgaaaaaatacatgaaacag
cctaaacaggtggaagtgcagccgaatactgtttcccctaaaaatatcgagcattggctc
gtttacgaccgcgacagagatcgtaaagaagtactttctaaactgacagaacgaattaat
ccattccttgccattatttttgcgaacacaaaggaagcggctgatgaattttatgaagtg
cttcaggaaaaaggattaaacgtcgatatactgcatggcggcatagctccacgcaaaaga
aaaaaagtgcttaaaaaacttcaggatgccgaagttcagtatttggtagctacagatctt
cttgcgcgtggaattgatattaccggagtcagccatattatcaatgctcaaattccccat
gaactggattattatgttcaccgtgtgggacgcacggcaagagcaggatgggatgggaaa
gctatcacattttacggcagaactgacgaagcatccattgcaaaactgaaacagcaggga
ataccttttgaatacaaagaatggaagcagggcggatggaaaacagtggacaaacgcttg
gacaaacggccccagcagactcctgcagcgcttccaccaaagaaaaaaacgacgaaagtt
aaaccgggatataaaaagaaagcccgtgccaaagcggagcaggaacaaaagcgtgaacga
cgtattacccgtagaaaaacaaagaagtaa
DBGET
integrated database retrieval system
