Alkalicoccus halolimnae: FTX54_007960
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Entry
FTX54_007960 CDS
T09800
Name
(GenBank) HU family DNA-binding protein
KO
K03530
DNA-binding protein HU-beta
Organism
ahal
Alkalicoccus halolimnae
Brite
KEGG Orthology (KO) [BR:
ahal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ahal03032
]
FTX54_007960
03036 Chromosome and associated proteins [BR:
ahal03036
]
FTX54_007960
03400 DNA repair and recombination proteins [BR:
ahal03400
]
FTX54_007960
DNA replication proteins [BR:
ahal03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
FTX54_007960
Chromosome and associated proteins [BR:
ahal03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
FTX54_007960
DNA repair and recombination proteins [BR:
ahal03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
FTX54_007960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_2
DUF2267
Rpf1_C
HU-CCDC81_euk_1
Motif
Other DBs
NCBI-ProteinID:
WWD81461
UniProt:
A0A5C7FFB5
LinkDB
All DBs
Position
1747178..1747450
Genome browser
AA seq
90 aa
AA seq
DB search
MNKTELINAVAEKTELSKKDATGAVDAVFDIITDALQKQEKVQLIGFGNFEVRERAARKG
RNPQTGEEIEIPASNVPAFKPGKALKDAVK
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
gtgaacaaaacagaacttatcaacgcagttgctgaaaaaacagagctttctaagaaagat
gcgacaggtgctgttgatgcagtctttgatattatcactgacgcacttcaaaagcaggag
aaagttcagttgatcggattcggtaactttgaagtacgcgagcgtgcggcacgtaaaggt
cgtaatccgcagactggagaagagattgaaattcctgcaagcaacgtacctgcatttaag
ccgggtaaggcacttaaagatgcagttaagtaa
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