Alkalicoccus halolimnae: FTX54_008465
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Entry
FTX54_008465 CDS
T09800
Symbol
addB
Name
(GenBank) helicase-exonuclease AddAB subunit AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
ahal
Alkalicoccus halolimnae
Brite
KEGG Orthology (KO) [BR:
ahal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ahal03400
]
FTX54_008465 (addB)
Enzymes [BR:
ahal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FTX54_008465 (addB)
DNA repair and recombination proteins [BR:
ahal03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
FTX54_008465 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
WWD78475
UniProt:
A0A5C7F951
LinkDB
All DBs
Position
1850244..1853717
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AA seq
1157 aa
AA seq
DB search
MSVNFLVGKSGTGKTYSIHTEIIRHCEEDPSGPPIILLVPEQMTFQAEREILARADKALT
RVQVLSFPRLAYRILQEVGGLTKAQISKTGIHALLRKIMTEEKNHLVLYKNASTTNGFIE
QLERMLTECKRYEMNASKIEETLEALDKNDNPTAAEKKLQGKLHDFSIIQNKSNEYLNGL
FIEAEDLLRITADSYHQAEKYMEAQVFLDGFHSFTPIEEQMVQSIMKVNDVTMALVLDKQ
PSENELLNRLDLFYETADTMQRFMQFLKKEDFNIYVSLFQNPLRFHTKGLSYLEEHIEKF
PITPTHRNEGIYLWEAISRRAEIEHTAREIDRLVREENYRYQDIALMTRSTDKYRSYIET
IFPLEKVPFFMDSKRSALDHPLSELIKSSLEIIDKNWPYEAVFRLIKTEFLFEHIGGSER
EEADLLENYVLSRGIRGRRWYDERTWEISKNSDAEMRQFENEKLDDLRRRITAPLLEFQN
EIKKAETIKDFGYALYNFIETVHIPAKLQHMHDYSVQTERLSEAREHEQIWKEIIKLLDD
IVEISGNEKVSLKVFREMIDAGLEGMSFSVIPPAFDQVLIADAETSRLQHIKAVFLVGMN
DGIFPQKPDESGILSEEERSYMLKAGLPLAPGAESLLMGESFLFYRAVSQAGSRLYTSWA
LQDAEGSKLQPSIYISQLTDMFPDAPIVTKFESPQEHEGEAAAAFVTNPDRALTYMTVQL
QQWKQGYAIHPVWWQVYDWFVQEKYSSKFRTLLSSLTYRNQPKKLKRNLSKKLYGKKINA
SVSRFEQFNACPFSQFAKYGLKLKERETFKLEAPDIGLLFHAALKDVTEKVREEKLDLTE
LSKAEVTHYANEVVEALAPQIQREIFHSSDRYKYILHKLKDVVSRAASIMAEQAKRNAFV
PVGLELGFGQGQTMPPLTFTLDDGTIMEVSGRVDRVDKADSSGNVYLRIIDYKSSPKDLK
LDEVYYGLSLQMLVYLDVVVSFADQWLGVEADPAGVLYFHVHNPILKSDQRLTLEEIEEE
LFKQFKMKGLVSADKNVIAATDTSLETGWSDIAPIRLKKDGEIAGGSKVVDPDDYNLLRE
FIRSHMADLGQRISDGDVSLTPYRKKQQIPCTFCSYQSFCQFDPSLETNNYRILQEKSAD
EVLDKIKKEGFSDGMDT
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgaattttcttgttggaaagtcgggtactggcaaaacgtacagcatacatacg
gagataatccgtcattgcgaagaagatccatcaggaccgcctattattctgcttgttcct
gaacagatgacatttcaggctgaaagagaaatattggcaagagcagataaagctttgaca
agggttcaggtactcagctttccaagacttgcttacagaattctccaggaagtaggggga
ttaacgaaagcacaaatttcaaagacgggtattcatgctctgcttaggaagattatgaca
gaagaaaagaatcatcttgtgctttataaaaacgcctctactaccaatggctttattgag
cagctggaaagaatgctcacagagtgtaaacggtatgagatgaatgcttccaaaatagaa
gaaacgctggaagcacttgataaaaatgacaaccctacagcagcagaaaaaaaacttcag
ggaaaacttcatgatttttccattattcaaaataaatcgaatgaatatctcaatggactt
tttatagaggcagaagatctactcagaataactgcagattcctatcaccaggcagaaaaa
tatatggaagcgcaggtttttttagatggatttcacagttttactccgatagaggaacag
atggttcaatcaattatgaaagtaaatgacgttacgatggcactcgtccttgataagcag
ccttctgaaaatgaattgttgaatcgtttagacctgttttatgaaaccgctgatacgatg
cagcgcttcatgcagtttttaaaaaaggaagactttaatatttatgtttctttatttcag
aaccccctcagatttcatacaaaaggtctatcttatttggaagaacatatagaaaaattc
ccgattacaccgacacataggaatgaaggaatttatttgtgggaagcgatcagccgcaga
gcagaaatagagcatactgccagagaaatagaccgtctggtacgggaagaaaattaccga
tatcaggacattgctctcatgacccgcagtacagataaataccgcagttatattgaaact
atttttccacttgaaaaggtccctttttttatggatagtaaacgatcagcactggatcat
cctctttcagaattgatcaaatcttccctggaaataatagataaaaattggccgtatgag
gcggttttcagacttataaaaacagaatttctgtttgagcatatcggcggaagtgaaaga
gaagaagccgatttactcgaaaattatgtactctccagagggataagaggcagacgctgg
tacgatgaaagaacgtgggaaatatcaaaaaacagtgatgcggaaatgaggcagtttgaa
aatgaaaagcttgatgacctgcgcaggagaatcactgcaccgcttctggaatttcagaac
gaaataaaaaaagctgagacgattaaagattttgggtacgccttatacaacttcatagaa
acagtacacattcctgcaaaacttcagcatatgcatgactattcagttcagactgaaaga
ctatctgaagcaagagagcatgaacagatatggaaagaaattataaaactgcttgatgat
atcgttgaaatcagtggaaatgagaaggtttcattgaaagttttccgggaaatgattgac
gcgggtctggaaggaatgtctttttccgtcattccccctgcatttgatcaggtattgatc
gccgatgcagagacttcccgcctgcagcatattaaagcagtatttttagtaggcatgaac
gatggaatatttccacaaaaaccggatgagagcggaatactgtcggaagaggaaagaagt
tatatgcttaaagccggactcccgctggcacctggagcggaaagtcttcttatgggagaa
tcctttcttttttatcgtgccgtctcacaggccggctcgcgtctttatacatcctgggca
ctgcaggatgcagaagggagcaagcttcagccttccatttacatctcccagcttacggat
atgtttccagacgctcccatagtaacgaaatttgaatccccgcaggaacatgaaggagaa
gctgcggccgcctttgtaacgaatccggatcgtgctctcacttatatgacggttcagctt
cagcagtggaagcagggatatgcgattcatccggtgtggtggcaggtttatgactggttt
gtccaggaaaaatacagcagtaagttcaggactctcttatcaagccttacctatcgtaat
cagccgaagaagctgaaaagaaacctgtctaaaaaattgtacggcaaaaagataaatgcg
agtgtttcccgctttgaacaatttaatgcctgtccattctcccagtttgcaaaatatggg
ttaaagttaaaggaacgagaaacgtttaaattagaagctccggatatcggactgctcttt
catgcggctttaaaagatgtaacagaaaaagtccgcgaagaaaaactggatttaaccgag
ttgtcaaaagcggaagttacccattatgcaaacgaagtggtggaagcactggctccccaa
attcagcgggaaattttccacagttcggacaggtataaatatattcttcataaattaaaa
gatgttgtctccagagcagcctctatcatggcggagcaggctaagaggaatgcatttgta
cctgtaggactggagttaggctttggtcagggacagactatgcctccgcttactttcacg
ctggacgacggaacgattatggaagtttccggaagagttgacagagtcgataaagcggat
tcctccggaaatgtttatctgcgtatcatagattataaatcaagtcctaaagacttgaag
cttgatgaagtttattatggattgtctctgcagatgcttgtatatcttgacgtagtcgtt
tcttttgcggatcagtggctcggtgtggaagcggatccggcaggagtcctttactttcac
gttcataatccaatcctgaagtctgatcagcgtcttacgcttgaagagattgaagaagag
ctgtttaaacagtttaaaatgaaagggctggtcagtgctgacaaaaatgtcatagcagct
acggacacgtctctggagacaggatggtcggacattgctccgataaggctgaaaaaagat
ggagaaatagctggaggctcaaaggttgtagacccagatgattataacctgctcagggaa
tttatccgcagtcatatggctgatcttggtcagcgcatttctgacggggacgtttctctt
actccatacagaaagaaacagcagataccgtgcacattctgttcctatcagtctttctgc
cagtttgatccttcactggaaactaataattaccgtattctgcaggaaaaatcagcggac
gaagtgctggataaaataaagaaagaaggtttttctgatggaatggatacctaa
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