Alkalicoccus halolimnae: FTX54_009345
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Entry
FTX54_009345 CDS
T09800
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ahal
Alkalicoccus halolimnae
Brite
KEGG Orthology (KO) [BR:
ahal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ahal03032
]
FTX54_009345 (topA)
03400 DNA repair and recombination proteins [BR:
ahal03400
]
FTX54_009345 (topA)
Enzymes [BR:
ahal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
FTX54_009345 (topA)
DNA replication proteins [BR:
ahal03032
]
Prokaryotic type
DNA Topoisomerases
FTX54_009345 (topA)
DNA repair and recombination proteins [BR:
ahal03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
FTX54_009345 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
Toprim_4
SPATA24
Toprim_2
Toprim_3
Motif
Other DBs
NCBI-ProteinID:
WWD78638
UniProt:
A0A5C7FRL4
LinkDB
All DBs
Position
complement(2055503..2057572)
Genome browser
AA seq
689 aa
AA seq
DB search
MSDYLVIVESPAKAKTIGKYLGKKYVVKASMGHVIDLPKSQMGVDVENDYSPKYITIRGK
GPILKELKQAAKKAKRVYLAADPDREGEAIAWHLADSLNIDQDSKCRVVFNEITKQAIKD
SFKHPREINTNLVNAQQARRVLDRLVGYNISPLLWKKVKKGLSAGRVQSVAVKLIIDREN
EILAFEPEEYWSITAQLEKDGRAFEAKFVSVNGEKKQLTSEQDVNEVLERIDGDVLTVDS
VKKRERKRNPVVPFTTSSLQQEAARKLNYRAKKTMMLAQQLYEGIALGKQGTTGLITYMR
TDSTRISDTAKNETYDYILDQFGEEYAGTEKKQKQSSNSQDAHEAVRPTSVKHDPKSIKQ
YLSRDQYRLYKLIWERLVASQMAPAVMDTMAVDMSNNGVQFRANGSKLKFAGFMKVYIEG
TDDGKEEKDKLLPDLEEGEETKAEIIEPNQHFTQPPPRFTEARLVKTLEELGIGRPSTYA
PTLDTIQRRGYVALEDKRFVPTELGTIVLELIEEFFPEILNVEFTATMESNLDSIEDGEE
SWVKIIDEFYGGFEKRLRTAEEEMKEVEIKDEPAGEDCEKCGNAMVYKMGRYGKFMACSN
FPECRNTKAIVKDIGVSCPTCKEGNVVERKSKKKRIFYGCDRYPECEFISWDKPISRPCP
KCEGLLVEKKSKKGVHVQCTECDYKEDVN
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgtcggattacttagtaatcgtggaatctcccgcaaaggcgaaaactattggaaaatat
ttagggaaaaagtatgtcgtaaaagcatcgatggggcatgtcattgatttaccgaaaagt
caaatgggtgtagacgtagaaaatgattattctcctaagtatattacgattcgcgggaaa
ggaccgattcttaaagagttaaaacaggctgccaaaaaggctaaacgtgtatatctcgca
gccgaccctgatagagagggcgaagcgatcgcgtggcatctagcagacagcctgaacatt
gatcaggactcaaaatgccgtgtcgtgttcaatgagattacgaaacaggctattaaagat
tcatttaaacatccgcgggaaatcaatacgaatcttgttaacgctcagcaggcaagacgg
gtgctggacagactggttggttataacatcagcccgctattatggaaaaaagttaaaaaa
ggattgagtgcaggaagggttcagtcagtcgctgtcaaactcatcattgacagggagaat
gaaatcctggcttttgaaccggaagagtactggtcaattactgcccagcttgaaaaagat
ggccgggcttttgaagctaaatttgtttcagtgaatggagaaaagaaacagcttacttca
gagcaggatgtaaatgaagtcctggagagaattgatggagatgtactaaccgttgattcg
gtgaaaaaaagggaacgtaaacggaacccggttgttccatttaccacctcttccttacag
caggaagcagcgagaaaattaaattatcgtgcgaaaaaaacgatgatgctggcccagcag
ctgtacgaaggaattgctttaggaaagcagggaaccaccggccttattacttatatgcgt
acggattccacgagaatttctgatacggcgaaaaatgaaacgtatgattatattcttgat
cagttcggagaagaatatgccggtacagaaaagaagcaaaaacagtcttccaattctcag
gatgcccacgaggcagtccggccaacctccgtgaaacacgatcctaaatcaataaaacaa
tatttatcaagggaccagtaccgtctttacaaattgatctgggaacgcctcgttgccagt
caaatggcccctgccgttatggatactatggcagtggatatgtcgaataacggcgttcag
ttccgtgcaaacggttcgaagttgaaatttgccggttttatgaaagtttacatcgaaggc
accgatgatggaaaagaagaaaaagataaactgctccctgatctggaagagggggaagaa
actaaagcagaaattatcgaaccaaaccagcacttcacccagcctccgccgagatttaca
gaagcgagactggtgaaaacgttggaagaacttgggataggccgcccttccacgtacgcg
cctaccctggatacaattcagagaagaggatacgttgcgctggaggataaacgattcgta
cctacagaactcggaacaattgttttggaattaatcgaagagtttttccctgaaatatta
aatgtggaatttacagccacgatggaatcgaatcttgattctattgaagacggtgaggaa
tcatgggtgaaaatcattgatgaattctacggcggatttgaaaaaaggcttcgcacagct
gaagaagaaatgaaagaagtagaaataaaagatgagcccgccggggaagactgtgaaaaa
tgcggtaatgccatggtttacaaaatggggcgttacggcaagtttatggcttgttccaat
tttcctgaatgcaggaatacgaaagctatcgttaaagatatcggggtttcctgccccacc
tgtaaagaaggtaacgtggttgagagaaaaagtaagaagaaacgaattttttacggctgt
gacagatatcccgaatgcgaatttatttcctgggataagccaatatcccgtccgtgtccg
aaatgtgaaggacttctggttgaaaagaaatcgaaaaaaggtgtgcacgttcagtgtacg
gaatgcgattacaaagaggatgtgaactag
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