Alkalicoccus halolimnae: FTX54_013930
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Entry
FTX54_013930 CDS
T09800
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
ahal
Alkalicoccus halolimnae
Pathway
ahal02020
Two-component system
ahal02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ahal00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
FTX54_013930 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FTX54_013930 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ahal03021
]
FTX54_013930 (rpoN)
Transcription machinery [BR:
ahal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FTX54_013930 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_21
Sigma70_r4
HTH_IclR
Aldedh
Motif
Other DBs
NCBI-ProteinID:
WWD79481
UniProt:
A0A5C7F5Z3
LinkDB
All DBs
Position
complement(3011265..3012587)
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AA seq
440 aa
AA seq
DB search
MNMDFNLIQQQSMKLVMTNELRQAITMLQYSVHDLQEYLQEQQLENPLIELKEPDVTKSV
EFKEMHRSGISQEEDVTPLDFLSNKEEGLQDYLLSQLRVLSLSKETYAAVSYLALSTDEN
GYLEADTRELAEELGEPEEKVSDALALLQQLEPAGVGARSLKECLLLQLERTPVRDRLAE
RIIENHLQLLADKQFKQIARQEEVDTADVQQAADFIQTLNPKPGAVFYQAPAEYVTPEVF
VEKTSKGWSVRLNSSGLPRMFMNRQYQQLLQKKNEEVQQYLKQKQEQFQWIRRSIEQRQE
TILKVTQAIVEHQHEFLEYGPEFAKPLTLKMIADKLEIHESTVSRATTRKYVQTPRGLYE
LKYFFQSGIRKETGEGQSAERAKIYLKRLLDAEDKKKPLSDQKLSELLKNEHHIELSRRT
VAKYREEMHIASSSRRKRFE
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgaacatggattttaatcttatacagcagcagtcgatgaagctcgtgatgacaaatgaa
ctgcgccaggcgataacgatgctgcagtattctgtgcacgatttacaggaatatctgcag
gagcagcagcttgaaaatcccctgatcgaactgaaggaaccggatgtaacaaaatcagtg
gaatttaaagaaatgcaccggtcgggaatttctcaggaggaggacgttactcctcttgat
tttctatcaaataaagaagagggcctgcaggattatcttctttcccagcttcgtgtttta
tctttgtcgaaagagacatacgcggctgtatcctacctggcactcagtacggatgaaaac
ggctatctggaagcagacaccagggagctggcagaagaacttggagagccggaggagaaa
gtatcggatgcacttgctcttttacagcagctggagcccgccggagtaggggcacgctcg
ttaaaggaatgtcttctcctccagcttgagcgcactcctgtacgtgaccgtcttgcagaa
agaattatagaaaaccacctgcagctcctcgcagacaaacagtttaaacagatcgccagg
caggaagaagtcgatacggccgatgttcagcaggctgctgactttatccagaccttaaat
ccaaagcccggtgctgttttttatcaggcaccggccgaatatgtgactccggaagtgttc
gtagaaaaaacttcaaaagggtggtcggtccgtcttaacagcagcggacttccacgcatg
tttatgaacagacagtaccaacagcttcttcagaagaaaaatgaagaagtccagcagtat
ttaaagcagaaacaggagcagttccagtggatccgccgaagcatcgaacaacgccaggaa
acgattctaaaggttacacaggcaattgttgaacaccagcacgagtttctggaatacgga
ccggagttcgcaaagccgctgacgctgaaaatgattgcagacaagctggaaattcacgaa
tcgacggtgtcgcgggctacgacgagaaagtatgtccagacgccgcggggattatacgag
ctgaaatactttttccaatcaggtatccgaaaagaaaccggcgaagggcagtctgccgaa
cgggcaaaaatatacttaaaacgacttttggatgctgaagataagaagaaaccattatca
gatcaaaaactttcagaactgttgaaaaacgagcaccatattgaactttccagacgaacg
gtagctaagtatcgggaagaaatgcatattgcatcctcatcaaggaggaaacgctttgaa
tag
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