Alkalicoccus halolimnae: FTX54_014205
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Entry
FTX54_014205 CDS
T09800
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ahal
Alkalicoccus halolimnae
Pathway
ahal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ahal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FTX54_014205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ahal03019
]
FTX54_014205
03009 Ribosome biogenesis [BR:
ahal03009
]
FTX54_014205
Enzymes [BR:
ahal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FTX54_014205
Messenger RNA biogenesis [BR:
ahal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FTX54_014205
Ribosome biogenesis [BR:
ahal03009
]
Prokaryotic type
rRNA helicases
FTX54_014205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Helicase_C_2
SecA_DEAD
Flavi_DEAD
ERCC3_RAD25_C
UvrD-helicase
AAA_19
Motif
Other DBs
NCBI-ProteinID:
WWD79534
UniProt:
A0A5C7F6J6
LinkDB
All DBs
Position
complement(3077336..3078766)
Genome browser
AA seq
476 aa
AA seq
DB search
MSNTFEQFQLSGEIREALAGMKYEQATEVQSLVIPRLLEGSDVIVKAKTGSGKTAAFAVP
MCEKAVWEENKPQALVLTPTRELAMQVKEDIQNIGRFKRLKAALLVGQQPAAPQRVELNQ
KVHIVTGTPGRVLDHIEKGTLNLENVKYVVLDEADEMLNMGFIDQVEHILAEVPKERITS
LFSATLPQKVIKLSEKYMNEPEIIETVLEEKPHIDFTWLETSRETKIEDLYKFLVKEQPE
SAVLFCNQKDMVDELTSYLKDRGLSCDKIHGGLEQKERTQVMEEFKRGTTRYLIASDVAA
RGIDVLDMPLVINVDVPIETEKFIHRTGRTARAGKEGKAVTFVIPQERRYADMIGRRLKT
EVDLEPVPFTTALEEKSFQQKMNEVPQLKKDKSAPLEKNITKLYFNGGKKKKLRAFDFVG
TITSIPGIEADDIGIITVESLATYVDILNGKGSVVLQDMQERKVKGKNLKVREARR
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatacgttcgaacagtttcaactaagtggagaaattcgtgaagcgctcgcagga
atgaaatacgaacaggcgacggaagttcagagccttgttatacccaggctgctggaaggc
agcgatgttatagtaaaagcgaaaacaggaagcgggaaaacagctgcctttgctgtgccg
atgtgtgagaaagctgtctgggaggaaaataaacctcaggcacttgtgctgacaccgacc
cgggaactggctatgcaggtaaaagaagacattcagaatattggacggtttaaacgttta
aaagcagctctcctcgtcggtcagcagccggcagctcctcagcgggtggaactgaatcaa
aaggtccacattgttaccggtacaccgggaagagtattggatcatatagaaaaaggcaca
ctaaatttggagaatgttaagtacgtggtacttgatgaagcagatgaaatgctgaatatg
ggttttatcgaccaggtcgagcatatccttgctgaagtacccaaagaacgaatcacttct
ttgttctcagcaacgctcccgcaaaaagtgattaagctttcagaaaagtatatgaatgag
ccggaaattattgagactgtactggaagaaaagcctcatattgattttacctggctggag
acctcccgggaaacgaaaatagaagatctctataaatttctcgtgaaagaacagccggaa
tcagctgtactgttctgcaaccagaaggatatggttgatgaactgacctcctacttgaag
gatcggggcctctcctgcgataaaatccacggagggctcgaacaaaaagaacggactcag
gttatggaagaatttaagcgcggcacaacccgctatcttattgcttctgacgtagcagca
cggggaattgatgtgcttgatatgcctcttgttataaacgtggatgttcctattgaaacg
gagaaatttattcaccggacagggcggacggcgcgggcaggcaaagagggaaaagcggtg
acctttgttattcctcaggaaaggcgttatgcggatatgatcggacgccgtttaaaaaca
gaagtagacctggagccggtacctttcacaacagcccttgaagagaaatcttttcagcag
aaaatgaatgaagttcctcagcttaaaaaagacaagagtgcccctctggaaaagaacatt
actaagctttattttaatggaggaaaaaagaaaaagcttcgagcttttgattttgtcggt
acaatcacctcgattcccggtattgaagctgatgacattggaattattaccgtagaatca
ttggctacttatgttgatattctcaacggtaaaggatccgtggttcttcaggatatgcag
gaacgaaaggtgaaaggaaagaatttaaaagtaagagaagcaagaagatag
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