Algoriphagus halophytocola: OM944_03215
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Entry
OM944_03215 CDS
T10580
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ahao Algoriphagus halophytocola
Pathway
ahao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ahao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OM944_03215 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ahao03019
]
OM944_03215 (pnp)
03016 Transfer RNA biogenesis [BR:
ahao03016
]
OM944_03215 (pnp)
Enzymes [BR:
ahao01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
OM944_03215 (pnp)
Messenger RNA biogenesis [BR:
ahao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
OM944_03215 (pnp)
Transfer RNA biogenesis [BR:
ahao03016
]
Prokaryotic type
tRNA degradation factors
OM944_03215 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
S1_RRP5
KH-I_KHDC4-BBP
KH_2
CTLH
S1_2
Motif
Other DBs
NCBI-ProteinID:
UZD23503
UniProt:
A0ABY6MK01
LinkDB
All DBs
Position
complement(800600..802741)
Genome browser
AA seq
713 aa
AA seq
DB search
MLPNLITKTITLEDGREITIETGALAKQADGSVVVKMGKAMLLATVVSKKEAGEGVDFLP
MSVDYQEKFASSGKIPGGFLKREGRLSDYEILISRIVDRAIRPIFPDDYHADTQIAITLV
SGDEDVLPDALAGLAASAALAVSDIPFNGPISEVRVAKIDGKLKINPTPTELENASLEFI
VAGSLDFILMVEGEADEIQEDEMVEAMQYAHEEIKRHCQAQIELTKMVGKEVKREYNHEK
SDPALFDKMKAELYDKLYDVVSKQIPNKSERSALVKEIKEAFVESLGEEHEYEASLIGPY
FSKIHKEAARNLTLDEKKRLDGRKLNEVRPIWSVVDYLPSAHGSAVFTRGETQSLTTCTL
GTKMDEMMVDGATISGYNKFYLHYNFPGFSTGEVKPNRGPGRREVGHGNLAMRALKKVLP
ADTENPYTIRIVSDILESNGSSSMATVCAGSLALMDAGIPIRSAVTGIAMGMISDAKTGK
YSILSDILGDEDHLGDMDFKVTGTSKGITACQMDLKVEGLDYAVLKEALYQAKEGRLHIL
DEITKTLAAPKPDLKPHTPRSFIMYIPKELIGAVIGPGGKVIQEIQKDTGATIVIEEIDN
QGKINIFSANQDKLNAALSRIKAIVAQPEIGETYTGKVKNIQPFGAFVEFMPGKDGLLHI
SEIKHERVESMDGVLEPGEEIMVKLIDIDKKTGKFKLSRKALLPKPEKPAPKA
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgttaccgaatttaatcaccaagaccatcacgctagaagatggcagagaaattacaata
gaaactggcgccttggctaagcaggctgatggttcagtagtagtgaagatgggcaaagct
atgcttttggctaccgtggtatccaaaaaagaagctggagaaggggtggactttttaccg
atgtctgtagattatcaggaaaaatttgcctcctcgggtaaaatccctggaggatttttg
aaaagagaaggaagactttccgactatgaaattttgatcagccgtatcgtagatagagcg
atacgacctattttcccagatgattaccatgccgatacgcagatcgctatcacattagta
tcaggagatgaagatgtgcttccagacgcattggcagggcttgcagcatctgcagcattg
gccgtttccgacattccgttcaatggacctatctctgaagtgagagtagcgaagatcgac
ggcaaactgaaaatcaatcctactcctacagagttggaaaatgcctctttggaatttatc
gtagcaggctccttggactttatcttgatggtagagggtgaggccgacgagatccaagaa
gatgaaatggtggaagccatgcaatatgctcatgaagagatcaagagacattgccaggct
caaatcgagcttaccaaaatggtaggtaaggaagtaaaaagagaatacaatcacgagaag
tctgatccagcactttttgataaaatgaaagctgagctttatgacaagctttatgacgtt
gtaagcaagcaaatcccgaataagtcagagcgttctgcattggtaaaagaaatcaaagaa
gcttttgtagaaagcctgggagaagagcatgaatatgaagcaagtctaattgggccatat
ttcagcaaaatccataaagaagctgcgagaaacctgacactggacgaaaagaagcgacta
gatggcagaaagctaaatgaagtacgtcctatctggtctgtagttgattatttgccttcc
gctcatggttcagcagttttcaccagaggagaaacgcagtcattgaccacttgtacactt
ggtaccaagatggatgagatgatggtagatggagctacaatctccggatacaataaattc
tatctgcactataatttccctggattttcaactggtgaggtaaaaccaaatagaggaccg
ggtagaagagaagtaggtcatggcaacctagccatgagagctttgaaaaaagtgcttccg
gcagacaccgagaacccatacaccattcgtatagtttctgatatcctggaatctaacgga
tcttcttccatggcaactgtttgtgctggttcactggcattgatggatgctggtataccg
attagatctgcggtgactggaatcgcgatgggaatgatctccgatgctaagaccggtaag
tattccatactttcggatattttgggagacgaggatcacctaggagatatggactttaaa
gtaacaggtacatcaaaaggtatcaccgcctgccagatggacttgaaagtagaaggctta
gattatgccgtgttgaaggaagctttatatcaggccaaagaaggaagacttcatattctg
gatgaaattaccaagactctggcagctcctaaacctgacttgaaacctcatacccctaga
tcattcatcatgtatattcctaaggaattgataggtgcagtgatcggcccaggcggaaaa
gtaattcaggaaatccaaaaggataccggagcaactatcgtcatcgaagagatcgacaat
caaggtaaaatcaatatattctcagccaatcaggataaacttaacgccgcactttcccgt
atcaaggcgatcgtggcgcagcctgaaatcggagagacttataccggaaaagtgaaaaat
attcaaccttttggcgcatttgtggaatttatgccgggtaaggatggtttacttcatatc
tccgagatcaagcatgagcgcgtagagtctatggacggcgtgttagagccaggagaagaa
attatggttaaattgatcgatatcgataagaaaactggcaaattcaagctttcaagaaag
gctttattgccaaagccggaaaaacctgcaccaaaagcataa
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