Algoriphagus halophytocola: OM944_09545
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Entry
OM944_09545 CDS
T10580
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ahao Algoriphagus halophytocola
Pathway
ahao03030
DNA replication
ahao03430
Mismatch repair
ahao03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ahao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OM944_09545 (dnaE)
03430 Mismatch repair
OM944_09545 (dnaE)
03440 Homologous recombination
OM944_09545 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ahao03032
]
OM944_09545 (dnaE)
03400 DNA repair and recombination proteins [BR:
ahao03400
]
OM944_09545 (dnaE)
Enzymes [BR:
ahao01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
OM944_09545 (dnaE)
DNA replication proteins [BR:
ahao03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
OM944_09545 (dnaE)
DNA repair and recombination proteins [BR:
ahao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
OM944_09545 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
HHH_3
T2SSK
DUF6282
Intimin_C
Motif
Other DBs
NCBI-ProteinID:
UZD20925
LinkDB
All DBs
Position
2396988..2401286
Genome browser
AA seq
1432 aa
AA seq
DB search
MYLIFDTETTGLPRDYNAPMSDVDNWPRLVQLAWQLHDEKGNLISNHNYIIKPDGFTIPY
NAEKVHGISTKRAEKEGHDLKQILGIFEGDVKNAKYLVGHNVEFDINVVGSEYIRAEATM
PLTATQLDTKDISTEFCAIPGGRGGKFKWPTLTELHQKLFGQGFGDAHDAAYDVDATARC
FFGLITHGVQAPEPGISIAEVVYEAPELEEANFAQAKDDQKAAAKDVLKQAGKADISDLT
DIPFTHLHVHSQYSVLQATSEIPAMVARAKELGMPAIALTDHGNMMAAFHFVKEAISKDI
KPILGCEFNLCRDRKNKSNKDDGFQTVLIAKNKTGYHNLAKLASYANIEGFYYVPRIDKE
LLTQYKGELIATTGGLWAEIPFLILNVGETQAEEAFVWWKEQFGADFYVELNRHGIPEEE
KVNEVLLEFAKKYDVKYFAANNSYYTEKADAKAHDVLLCVKDGERLEGPEAKPKKYVGKR
GREFRFGFPNDEFYIKSPDEMKKLFADLPEAIECTAEITEKIETYKLAREVLLPAFDIPE
RFKHPEDEVDGGKRGENAFLRHLTYEGAKKRYKEITPEIEERLDFELATIENTGYPGYFL
IVQDFIVEARKLGVSVGPGRGSAAGSAVAYCTGITNIDPIAYNLLFERFLNPDRVSLPDI
DIDFDDEGRQRVIDYVIKKYGSNQVAQIITYGTMAAKSAIRDTARVLNLPLPEAGRLANL
VPDIKLKALFGLANNRSALSEKLKGQGELIAKADELIKISQGQDESAKTINQATMLEGSV
RNLGIHACGVIITPSDITNFVPVALAKDSDMVCTQFDNSVVESAGLLKMDFLGLKTLTLI
KTAVKIVKERHGITLDPDHFPIDDVKTYELFQRGETVGIFQYESAGMQKYMRELKPTVFA
DLIAMNALYRPGPLAYIPSFIKRKHGTEVIVYDLDDMQEYLEETYGITVYQEQVMLLSQK
LAGFTKGEADVLRKAMGKKQKDVLDKMKPKFIEQASAKGHDAKKLAKIWTDWEAFASYAF
NKSHSTCYAWIAYQTAYLKAHYPAEYLASVLSNNMNDITQVTFFMEECKRAGIPVLGPDV
NESKNGFTVNAAGEIRFGMAAIKGAGSAAVDAIIEEREKNGPYKNIFDFAKRVSSKALNK
KTMEALAMAGGFDCFKEHHRRQYLEAPDGDLTLIEKATKYAQKVQQEEDSNQVSLFGGDA
GSMEVPMPTIAPMEPFTQLQQLNIEKEVVGLYISGHPLDQYKLEIESFTNASLPELNDLE
SLRNRPEIRLAGSVSTFAHRTTKNGKPFGTLTLEDYQGGFTFFLFGDDYVKFKEYFMPNW
YLYITGKVGSKRWAENELEFKINSIILLDEVRGKMIKGLRVNIDLDDLTLDLMEKLEAIT
EKYKGEAKLYFDVVDRKENIALELFSKKFSIDPSAEMIQELKEIPEVVYKVV
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
atgtacttaatttttgataccgaaaccaccggtcttccccgcgattacaatgctcccatg
tccgatgtggacaactggcccaggctggttcagctcgcatggcaactgcatgatgagaag
ggaaatctgatttccaaccataactacatcatcaagccagatgggtttaccattccatac
aacgcagaaaaagtacatggaatctctaccaaacgggccgaaaaagaaggtcatgacctg
aagcagattctcggcatttttgaaggagatgtaaaaaacgccaagtatctcgtcgggcat
aacgtggaatttgacatcaacgtggtcgggtcagagtatatccgggcagaggccaccatg
ccgctgacagcgactcagcttgacaccaaagatatttctactgaattctgcgccattcct
ggaggccgtgggggcaagttcaaatggcctactctgactgaactgcaccaaaaactcttt
ggacagggatttggagatgcccatgatgcagcttacgatgtggacgccacagccagatgt
ttcttcggactgatcacacatggggttcaggctccggagccaggcatttccattgccgaa
gtagtctatgaagcccccgaactggaggaagccaactttgcgcaagcaaaagatgaccaa
aaagctgccgccaaagatgtactgaagcaggctggcaaagctgacatttctgatctgacg
gatattcccttcacccatttgcacgtccatagtcagtactcggtactacaggctacttcc
gaaatacctgctatggtggcccgtgccaaagagctgggcatgcccgcgatcgctttgacc
gaccatggcaatatgatggcagcttttcactttgtaaaagaagccatatcaaaagatatc
aaacccatcttaggctgcgagtttaacctttgccgtgaccggaaaaacaagtcaaacaag
gatgatggcttccaaactgtcctcatagctaaaaacaaaaccggataccataacctggca
aaactggcctcctacgccaatattgaaggtttttactatgtacctagaatagacaaggag
ctattgacgcagtacaaaggtgagctgatcgccaccacaggggggctttgggcagagatt
ccatttctgattctgaatgtgggagaaacccaggctgaagaagccttcgtctggtggaaa
gagcagtttggtgcggacttctatgtggagctcaatcgccatggtatcccagaggaagaa
aaggtaaacgaggttttgttagaatttgccaagaaatacgatgtcaaatatttcgcagcg
aacaattcctactatacggaaaaggctgatgccaaggcgcatgatgttttgctctgtgtg
aaggacggtgagcgcctagaaggcccggaagccaaacccaaaaaatacgtaggaaagaga
ggacgggaatttagatttggttttccaaacgatgaattctacatcaagtcgccagatgag
atgaaaaagctctttgcagacctgcctgaagccatagaatgcaccgctgagattactgag
aaaatagaaacttataagcttgcgcgggaagtattgctaccggcatttgatattccggag
cggtttaagcatcctgaagatgaagtggacggaggcaagcgtggagaaaatgcatttcta
cggcacctcacctacgagggcgctaaaaagcggtataaagaaatcactcctgaaatagaa
gaacgactggattttgaactcgctaccattgagaacacggggtatccgggttactttttg
attgtacaggatttcatagtggaggctagaaaacttggggtttccgtggggccagggcgt
gggtctgctgccggatcagcggtagcttactgcacaggaatcaccaatatagatcccata
gcctacaatctactatttgagagattcctaaatcctgatcgtgtatcccttcccgatatt
gatattgactttgatgacgagggccgtcagcgggtcattgattatgtaatcaaaaaatac
ggttccaatcaggtggcacaaatcatcacctatggcaccatggctgccaaatcggcgatt
cgagatactgccagagtactgaatctaccactgcctgaggccgggagattggccaacctg
gtccccgatattaaattaaaagcactttttggcctggccaacaatagatcagcactttct
gagaagctcaaaggacaaggtgaattaatcgcaaaggccgatgaactgatcaaaatctcc
caaggccaagatgaatctgcaaagaccatcaatcaggctaccatgctggaagggtctgtg
cgaaatctaggtattcatgcctgcggggtgattatcacgccttctgacatcaccaatttt
gtcccggtagcactggcgaaagactcagacatggtgtgtactcagtttgataactctgtg
gtagaatctgctggtctactgaagatggactttttagggcttaaaaccctaacgctgatc
aaaacagccgttaagatcgtgaaggaaagacatggaatcaccttggatccagatcacttt
cccatagatgatgtcaagacctatgagcttttccaacgcggggagacggtaggtatattc
cagtatgaatctgccggaatgcaaaagtacatgcgcgagcttaaacccacagtttttgca
gatttgatcgccatgaacgcgctctatcgtccgggaccattggcttatatcccttcattt
atcaaaagaaagcatggcacagaagtaatcgtctatgacctggacgacatgcaggaatat
ctggaggaaacctacggcatcacagtttatcaggagcaagtgatgctcttgtcccagaaa
ctggcaggatttaccaagggtgaggccgatgttttgcgaaaggcaatgggtaagaaacaa
aaggatgtactggacaagatgaaacccaaattcatcgagcaggcatctgccaaaggacat
gacgctaaaaaacttgccaagatctggacagactgggaggcttttgcgtcctatgccttc
aacaaatcccactccacctgctatgcttggattgcttatcagacagcctacctcaaagca
cattaccctgctgaatatttagcttcggtactgagcaataacatgaacgatatcacccag
gtgacatttttcatggaagagtgtaagcgggcaggcataccagttttgggcccagatgtc
aatgaatccaaaaatggctttacggtaaatgctgccggggaaatccgctttggcatggct
gccatcaaaggcgcaggttctgcagctgtggatgctatcatcgaagagcgggagaaaaac
ggcccctataaaaacatctttgactttgcgaagcgggtgagttctaaagcactcaacaaa
aaaaccatggaagccctggctatggccggtggatttgactgcttcaaggagcatcataga
aggcaatacctggaagctccggatggagaccttacgctgatagaaaaagccacgaaatat
gcccaaaaagtccagcaagaagaagacagcaaccaagtgagtctatttggaggagatgcc
ggaagtatggaagtacctatgccaaccatagctcctatggagccctttacccagctacag
caactaaatatagaaaaagaagtggtcgggctttatatttccggccatcctttggaccag
tacaaactggagatcgagtcctttaccaatgcttccttacccgaactgaatgacctggaa
agcctgagaaatagaccggaaatccgtctggcaggatctgtatccacctttgcacatcgg
actaccaagaacgggaaaccattcggtacgctgactttggaagattaccagggcggtttt
accttctttctctttggggatgactacgtgaagttcaaagagtatttcatgccaaactgg
tacctctatattacaggaaaagtaggcagtaagcgttgggctgaaaatgaactggaattc
aagatcaatagcatcattcttttggacgaagtccgtgggaaaatgatcaaaggcctgcgt
gttaatattgatctggatgatctgacactggatctcatggaaaaactcgaagctattacc
gagaagtataagggggaagccaaactgtactttgatgtggtggacagaaaagagaacatc
gctttggagcttttctccaaaaaattctccatcgacccaagtgctgaaatgatccaagaa
ctcaaggaaatccccgaggtagtttataaagtggtctaa
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