Algoriphagus halophytocola: OM944_14460
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Entry
OM944_14460 CDS
T10580
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ahao Algoriphagus halophytocola
Pathway
ahao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ahao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OM944_14460 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ahao03021
]
OM944_14460 (rho)
03019 Messenger RNA biogenesis [BR:
ahao03019
]
OM944_14460 (rho)
Transcription machinery [BR:
ahao03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
OM944_14460 (rho)
Messenger RNA biogenesis [BR:
ahao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
OM944_14460 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
NACHT
AAA_22
Mor
OB_RNB
S1CSD-TOTE-2
AAA
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
UZD21866
UniProt:
A0ABY6MHU2
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Position
complement(3571551..3573332)
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AA seq
593 aa
AA seq
DB search
MYNIEELRVRLLSELKEIAEELGVKNHKSLKKDELVYAILDQQAITPEKALPKKKPSATE
ATPPKPKEAEGKPSSPQANPKEEPEFKPKFKRQNVTAVPETAETSKPEDKKAAEPSPKES
KPARPSRKEAAPAKAERKAPAEAAASEEPKTFRPRRKVIEETQNTADTKDESSNPGTKPA
KQEQEVELPKRRNFKSQDEVMAPAAETVSHPNRKRNGVNPREFDGVIENEGVLEMMQEGY
GFLRSLDYNYLASPDDIYVSPSQVKLFGLKTGDHIKGSIRPPKEGEKYFALLKIGTVNGK
TTDEIRDRVPFEYLTPLFPEERLNLSTTPDKFSTRVLDLFAPIGKGQRGMIVAQPKTGKT
VLLQQIANAITKNHPEVHLMILLIDERPEEVTDMARSVNAEVISSTFDETADRHVKVSNI
VLEKAKRMVEVGHDVVILLDSITRLARAHNTVVPSSGKILSGGVDANALHKPKRFFGAAR
NVEHGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELALDRKLANRRIYPSIDVLNSGT
RREDLLMDKEEMQRVWILRKLMSDMNSQESMEFLLQRMKGTRDNAEFLISMNG
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgtacaacatagaagaactcagagtcagattattatctgaactgaaggaaatcgcagag
gagcttggtgtcaagaaccacaaatctctcaagaaagacgaactcgtctatgccatcctg
gatcagcaggccatcacccccgagaaagccctccctaaaaagaaaccttcagctacagaa
gctacccctcccaaaccaaaggaagccgaaggaaaaccaagttcccctcaggcaaatccc
aaagaggagccagaattcaagcctaaattcaaaagacaaaatgtaacggcagttccagaa
actgcagaaacatccaagccagaggacaaaaaggcggctgaaccatccccaaaggaaagt
aaaccagcgcgtccatcccgaaaggaggcagctcctgccaaagcagagcgtaaagctcca
gcagaagcagcagcttctgaggaaccaaaaacgttcagaccgaggagaaaggtcatcgaa
gaaactcaaaatactgccgataccaaggacgaatcctccaatccgggcacaaagcctgca
aaacaggagcaggaagtagaattgccaaaaagacgcaatttcaagtctcaggacgaggtc
atggccccggcggcagaaaccgtttcccatcccaacagaaaaagaaatggcgtgaatcca
cgcgaatttgacggggtaatcgaaaatgaaggcgtactggaaatgatgcaggaagggtac
ggattcctcagatccctagattacaactacctggcttcaccagacgatatttacgtttct
ccaagtcaggtcaagctttttgggctgaaaaccggtgatcatatcaaaggctctatcaga
cctccaaaagaaggtgaaaaatactttgccctcttaaaaataggaactgtaaacggcaaa
actactgacgaaatcagagaccgggttccatttgaataccttacccctcttttcccggaa
gaaagattaaacctatctaccactccggacaagttttctacccgtgtattggatcttttt
gctcccataggtaaaggtcaaaggggtatgatcgtagcccagccaaagactggtaaaact
gttttgctgcagcagatcgccaatgccatcaccaaaaaccaccctgaggttcacctgatg
atcctactgatcgacgaacgaccggaggaggtgactgatatggccagatccgtaaatgca
gaggtgatatcctccacatttgatgagacggcagatcggcatgtgaaggtttccaacatc
gtgctggagaaagccaagcgtatggtggaagtaggacatgatgtagtgatcctattggac
tccatcaccagacttgccagagctcacaataccgtagtacctagctcaggaaagatactt
tccggcggtgtagatgccaatgcacttcataagccgaagcgcttcttcggtgcagccaga
aatgtagagcatggtggatcactgactatcatcgccactgcattggtagagacaggttcg
aaaatggacgaggtgatctttgaagaattcaaaggaaccggtaacatggaactggcactg
gaccgtaagttggcaaacagaagaatctatccatctatcgacgtactcaactccggtacc
cgccgcgaggatctactgatggacaaagaagagatgcagcgcgtgtggatccttcgtaag
ctgatgagcgatatgaactctcaggagtccatggagttcttgctacagcgaatgaaagga
accagagacaatgcggagtttttgatttctatgaacgggtag
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