Algoriphagus halophytocola: OM944_15530
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Entry
OM944_15530 CDS
T10580
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ahao Algoriphagus halophytocola
Pathway
ahao03420
Nucleotide excision repair
ahao03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ahao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OM944_15530
03430 Mismatch repair
OM944_15530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ahao03400
]
OM944_15530
Enzymes [BR:
ahao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OM944_15530
DNA repair and recombination proteins [BR:
ahao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OM944_15530
MMR (mismatch excision repair)
Other MMR factors
OM944_15530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
PcrA_UvrD_tudor
AAA_11
DEAD
DUF3553
CowN
ERF
ResIII
Motif
Other DBs
NCBI-ProteinID:
UZD22075
LinkDB
All DBs
Position
complement(3792384..3794651)
Genome browser
AA seq
755 aa
AA seq
DB search
MDYLEGLNPPQREAVEHTDGPVMIIAGAGSGKTRVLTYRIAHLIYSKNVDPFSILSLTFT
NKAAAEMRHRIESLVGLDARNTWMGTFHSVFAKILRVEAEKIGYPSNFTIYDADDSKSLI
RTIVKEMRLDDKVYKANAVLSRISGAKNRLITWKAYQDDPYVKADDEAAMKPKMGEIYQR
YQDRLFKAGAMDFDDLLFNTNVLFRDHLDVLNKYQQRFRYVMVDEFQDTNLSQYLITKKL
AAVHQNICVVGDDAQSIYAFRGADIQNILNFEKDYPDLFVVKLEQNYRSTKNIVEAANSI
IDKNKAQLKKLVWTSNDDGDLIELVKASSDNEEGKIVAQTIFEEKNTKKLSNSDFAILYR
TNSQSRAIEEALRKLNLTYKIVGGLSFYQRKEIKDLMAYMRFTVNPSDEEAFKRIVNYPK
RGIGNTSVDKLLIAAFDHDMPLWEVVQNSHSFLGGRAASQLADFATMIQAFQIEVERKDA
FEAANSIAKQSGLLRELYEDKTIEGLNRYENVQELLNAIKEYVDNEENEDKSLGAFLQEI
ALLTDNDRDKDTTDAITLMTIHSSKGLEFKQVFVVGMEEDLFPSQMMMQSREDLEEERRL
FYVATTRAMDKLYFSYALTRYRYGRLLNCEPSRFLEEVNPDCIKVNKKVAAKDMPGAFRR
EGLPGSSESTGFIGIKKKPASRMPTQMKVHTPSPDFKPSNTNNLQAEQLVEHPKFGFGKV
QKIETEGLNRKATIQFEHFGEKTLLLSFAKLRIID
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atggattacctcgaaggcttaaaccctcctcagcgagaagctgtagaacatacagacgga
cccgtgatgatcatcgcaggtgcaggatctggcaaaaccagagtactgacctacaggatc
gcgcatctgatttactctaaaaatgtagacccgttcagtatactgtcactgacctttacc
aacaaggctgctgccgaaatgcggcaccggatagaatccctggtggggctggatgcacgc
aatacctggatggggacttttcactctgtctttgccaaaatactgcgggtggaagcggag
aaaatcggctacccttctaatttcacgatttacgatgcagatgattccaaatccctgatc
cgaaccattgtgaaagaaatgcgcctggatgataaagtctataaagccaatgctgtactc
tccagaatctccggagccaaaaaccgcctgatcacctggaaagcttatcaggatgaccct
tacgtcaaagcagacgatgaggcggctatgaaaccaaaaatgggtgaaatctaccagcgg
taccaggaccggctattcaaggccggcgccatggacttcgatgatttgctgttcaatacc
aacgtgctgtttcgtgaccacctggacgtattgaataagtatcagcaacgcttccgctat
gtcatggtggatgagtttcaggatacgaacctttcccaatacctgattactaaaaagctt
gcggccgtccatcaaaacatctgtgtagtcggcgacgatgcacagagtatttacgccttc
cggggtgcggatattcagaatatcctgaatttcgaaaaggactacccggatctgtttgtg
gtcaagctggagcaaaactaccgatccaccaaaaatatagtggaagcggctaattccatc
attgacaagaataaagcgcagctgaaaaaactagtctggacttccaatgatgatggagac
ctgatcgaactggttaaagcttcctctgataatgaagaagggaaaatcgtggctcagact
attttcgaagagaaaaacaccaaaaaactgagcaatagtgactttgcgattttatataga
accaactcacagtccagagccatagaggaagccctacgcaaattaaacctgacctataaa
atcgtaggtgggctttccttttaccaaagaaaggaaataaaagacctcatggcttacatg
cgcttcacggtcaatccctccgatgaggaagcctttaagcgaatagtcaattatcccaag
cggggtatcggcaacacctcggtagataagcttttgatcgctgcctttgatcacgatatg
ccgctctgggaggtggtacaaaattcgcacagttttctgggagggcgagctgccagccag
ctggcggactttgccactatgatccaggcattccaaatcgaagtggaacgcaaagatgct
ttcgaagcggccaatagtatcgccaagcaaagtgggctattgcgggagctgtatgaagac
aaaaccatagaaggcctcaaccgctacgaaaacgtacaggaactccttaatgccatcaaa
gaatacgtggacaatgaagagaatgaagataaaagtttgggggcatttcttcaggaaatc
gccttattgacggataatgaccgagacaaagacacgactgacgccatcacgctgatgacc
attcactcgtcgaagggattggaatttaagcaggtctttgtggtgggaatggaagaggat
cttttcccttctcagatgatgatgcaaagcagagaagatctggaggaagagcgcaggctg
ttttatgtagctactacgcgtgccatggacaaattatactttagctatgccctgacacgt
tatcgatacggcaggttactcaactgtgagccgagcagatttctggaggaagtcaatccg
gattgcatcaaggtaaacaaaaaagtggctgctaaagatatgcccggggcctttagacgg
gaaggtttgccaggcagcagcgaatctactgggtttataggcataaagaaaaaacctgcc
tccaggatgccgactcagatgaaggtacatacacctagcccggatttcaaaccttccaat
accaacaatctgcaggcggagcaattggtggagcatccgaaatttggctttggaaaagta
caaaaaattgaaacagaaggacttaacagaaaagcaacgattcagtttgagcattttggt
gaaaagacattattacttagctttgcgaagctcagaattatagactag
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