Algoriphagus halophytocola: OM944_17795
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Entry
OM944_17795 CDS
T10580
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ahao Algoriphagus halophytocola
Pathway
ahao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ahao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OM944_17795 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ahao03019
]
OM944_17795 (recQ)
03400 DNA repair and recombination proteins [BR:
ahao03400
]
OM944_17795 (recQ)
Enzymes [BR:
ahao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OM944_17795 (recQ)
Messenger RNA biogenesis [BR:
ahao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OM944_17795 (recQ)
DNA repair and recombination proteins [BR:
ahao03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OM944_17795 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
RecQ-1-like_HTH
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_Mga
Myb_DNA-bind_8
HTH_PafC
HHH
HTH_40
Motif
Other DBs
NCBI-ProteinID:
UZD22496
UniProt:
A0ABY6MJN1
LinkDB
All DBs
Position
complement(4288624..4290801)
Genome browser
AA seq
725 aa
AA seq
DB search
MEENIKADLKKIFGFSKFRGNQEPIVDNLLNQRNTFVIMPTGAGKSLCYQLPAVVKEGTA
IVISPLIALMKNQVDQLKALGINAHFLNSTLNKSEANRVKSEVLQKKTKLLYVAPESLTK
EENVEFLKSAKLSFVAIDEAHCISEWGHDFRPEYRRIKSIIAQIAPDLPIIALTATATPK
VQQDIQRNLQMEEADLFKSSFNRTNLFYEVRPKVKNDSKKHLIKFIKGHKGKSGIIYCLS
RKKVEEIAQLLQVNQINAAPYHAGLESAVRIKTQDDFLNEELDVIVATIAFGMGIDKPDV
RYVIHYDVPKSLEGYYQETGRAGRDGLEGHCLMFYRYEDIIKLDKFNKDKPVTERENAKL
LLQEMAAYAETGVCRRKFILNYFGETMDEDCGFCDNCKRERETFEGMEKVLTVLQAVKET
NQRFGLAHLVQVITGESSDYVQSYAHDQLPVFGKGKDDPEKVWVGVIRQVMILNMLEKDI
ESYGVLKLTPKGLEYLDAPYEIELHKDHDFEAEVETEQAEVEVSTGVAYDEKLFELLKAE
RKKVARSKGLPPYVIFQDPSLEEMATVYPTTREELAQINGVGMGKVAKFGSPFLKLIANY
VEENEIETASDVVVKSSGTRSKVKISIIQQIDRKIDLDEVAENLNISMSELLHEIEQIIY
SGTKLNIDYYIEHIMDEDREDILHDYFMNASSDQIKEALNELEDEDFAEDELRVYRIKFI
SEHAN
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
gtggaagaaaatataaaagcagatctaaaaaaaatctttggattcagtaagtttcgcggc
aatcaagaacccattgtcgataacctactgaaccagaggaatacctttgtgatcatgcca
actggagcggggaaatctctttgctaccaattgcccgcagtagtcaaagaaggaactgcc
atcgtgatatccccactgattgccttgatgaaaaatcaagtcgatcagctgaaagcgctg
ggaatcaatgcgcatttccttaattctacattgaacaaatctgaggcaaacagggtcaaa
agtgaggtattgcagaaaaaaaccaagctgctctatgtggcccccgagtcccttaccaaa
gaggagaatgtggagttcctaaaatccgccaagctgagctttgtggctatagacgaagcc
cactgtatctcggaatggggccatgactttcgtccagaataccggcgcatcaagtctatc
atagcacagatagcgccggatcttcccattattgccttgactgctactgctacgcctaag
gtgcagcaggatatccagcgcaatctccagatggaggaagcagacctatttaagtcatct
ttcaacagaaccaacctattctatgaggtgcggccaaaggtgaaaaatgactccaagaag
catctgatcaaattcatcaaagggcacaagggaaaatcaggtattatctattgcctgagc
cggaagaaagtagaggaaatagcccagctacttcaggtcaaccaaatcaatgcagcccca
tatcacgcaggattggaatcggctgtaaggataaaaacccaggatgatttcttaaatgaa
gaactggatgtcatcgtggccaccattgcttttgggatgggaatagacaagccagacgtg
cgctatgtgatacactatgacgtacccaagtcgctggaaggctactaccaagagaccgga
agagcgggcagagatggcctggaagggcactgcctgatgttctatcgctatgaggatatc
ataaaactggacaagttcaacaaagacaaacctgtaaccgagcgagaaaatgccaaactg
ctcttgcaagaaatggccgcttatgcagaaaccggcgtttgtagaaggaaattcattctc
aactacttcggagaaaccatggatgaagactgtggattctgtgacaactgtaaacgcgag
cgggaaaccttcgagggtatggaaaaagtccttaccgttttacaggctgtgaaagagacc
aaccaacgttttggcctagctcacctagtacaggtcatcaccggtgaatcatctgattat
gtgcagagctatgcgcacgatcagctacctgtttttggcaaaggtaaagacgatcctgaa
aaagtatgggtaggtgtaatccgccaggtcatgattctcaatatgctcgaaaaagacatt
gagagctatggcgtgctcaagctgactccaaaaggcctggaatacctagatgctccctat
gaaatcgaacttcataaagaccacgatttcgaggcggaagtggaaacagaacaggcagaa
gtggaggttagcactggagtagcctacgacgaaaaactctttgagctactgaaagcagag
cgaaaaaaagtagctcgaagcaaaggtttgcctccctatgtgatctttcaggacccttct
ttagaagaaatggcgaccgtttaccccactactcgtgaggagctagcgcaaatcaatggc
gtaggtatgggaaaagtcgctaaattcgggtctccgtttttgaaattgattgcgaactat
gtggaagaaaatgaaattgaaaccgcatcagatgtagtagtcaagtcctcaggaacgaga
tcaaaagtgaaaatctcgattatccagcagattgaccgcaaaatcgacctggatgaggta
gccgaaaacctcaacatcagtatgagtgaactgctccacgaaatagagcagatcatttat
agcggaactaaactaaatatagattactacatcgagcatatcatggacgaagaccgtgaa
gacattcttcatgattatttcatgaatgccagtagtgaccagatcaaggaagctttaaat
gaattggaagacgaggatttcgcagaagatgaattgcgagtctatcgcatcaagttcatt
tcagagcatgccaattaa
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