Algoriphagus halophilus: V8V91_10245
Help
Entry
V8V91_10245 CDS
T10878
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
ahap Algoriphagus halophilus
Pathway
ahap02020
Two-component system
ahap02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ahap00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
V8V91_10245 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
V8V91_10245 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ahap03021
]
V8V91_10245 (rpoN)
Transcription machinery [BR:
ahap03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
V8V91_10245 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
HTH_12
MarR
SF3b1
HTH_IclR
LacI
Motif
Other DBs
NCBI-ProteinID:
XFE76436
LinkDB
All DBs
Position
complement(1903931..1905385)
Genome browser
AA seq
484 aa
AA seq
DB search
MQKLNLSQSLSQKLSPQQIQFIKLLQVPTAELETRIEEELEINPALEEGKDDDSDSSQDD
FEDSYEEDSVQDDRDVNIDDYLDDEYGGYKMQGDGNYSPDEEDREIPISSQSSLHEQLVS
QLNFLKLDDRQRIIGQQLIGSIENDGYIRRDLDAIINDLAFSQNIETDIDELEEILRKIQ
GFDPAGIASRNLQECLTLQLERKEHPEDPTVIHALRIIQDCFDEFTKKHYSKIQKKCDLT
EEETKEAVNLITKLNPKPGGVADGLVRTQYIIPDFILTNNGGKMEISLNSRNAPELRISR
SYSEMFDAYDKSDKKDKKLKETVSFVKQKLDAAKWFIDAIKQRQNTLLRTMEAILTYQKE
FFIDGDETNLRPMILKDIAERIDMDISTVSRVANSKAIQTEFGVYPLKYFFSEGIATDSG
EDVSNREVKSVLQAMVDQEDKKKPLSDDKLVKMLNKKGYNIARRTVAKYREQLQIPVARL
RKEL
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaagctaaatcttagccagtcactttcacagaaactttctcctcaacagatccaa
tttatcaaattgttgcaggtacccactgcagaattggagaccagaattgaggaagagttg
gaaataaatcctgctttggaagaagggaaggatgatgattcagatagttctcaagacgat
tttgaagatagttacgaggaggattctgtgcaggatgatagggatgttaacattgacgat
tacctcgatgatgaatatggaggttacaagatgcaaggagatgggaattatagccctgat
gaagaagatcgggaaattccgatttccagtcagtcatccttgcatgagcaattagtgtct
cagcttaattttcttaagttggatgatcgacaaagaatcatcgggcaacagttgattggg
agtatagaaaacgatggctacatccgtagggacctagatgcgataattaatgacttggct
tttagccaaaatattgaaactgatattgatgaactggaggaaattttgagaaaaatccag
ggctttgatccagctggaattgcttcaagaaatcttcaggaatgtctgacacttcagctt
gaacgcaaagaacatccggaagatcctacggtaatccatgctcttcgaattattcaagat
tgcttcgatgagtttacgaaaaagcattattccaaaattcagaaaaagtgtgatctaacg
gaggaggagacgaaagaggcggtaaatctaattacgaaactgaacccgaagcctggaggc
gtagcagatggattggtccgtacccagtatattattcctgattttattctgacgaataac
ggaggaaaaatggaaattagcctaaattccaggaatgcacccgagcttagaatttccagg
tcttattctgagatgtttgatgcctatgacaagagtgataagaaggataaaaagctcaaa
gagacagtatcttttgtcaaacagaagttagatgctgcaaaatggtttattgatgccatt
aagcaacgacaaaatactttattgaggacgatggaggcaatacttacttatcagaaggaa
ttctttatcgatggggatgaaaccaacctccgtccaatgattttaaaagatattgctgaa
agaattgatatggatatttccactgtgtctcgtgtagcaaatagtaaagccatccagacg
gaatttggtgtatatcctttaaagtatttcttttcggaaggaattgccacggatagtgga
gaggatgtaagtaaccgtgaagtaaaatcagttttgcaggcaatggtggatcaagaggat
aagaagaagcctttatcagatgataagcttgtgaagatgctcaataaaaaggggtataat
atagcaagaaggaccgtggcaaaatatagagaacaacttcaaataccggttgcaagacta
agaaaagaactctag
DBGET
integrated database retrieval system
