Algoriphagus halophilus: V8V91_21115
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Entry
V8V91_21115 CDS
T10878
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
ahap Algoriphagus halophilus
Pathway
ahap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ahap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V8V91_21115 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ahap03019
]
V8V91_21115 (rny)
Messenger RNA biogenesis [BR:
ahap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
V8V91_21115 (rny)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH-I_KHDC4-BBP
Cas3_HD
Motif
Other DBs
NCBI-ProteinID:
XFE73525
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Position
3928466..3930031
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AA seq
521 aa
AA seq
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MGDILYIILAALVGLGAGAAIAGLLIKNKNQKLEEETKERVKSMLREAEINAEAIKKDRI
LEAKEKYLKLKSEFDEEVNTKKNIIITNENKVKQREQHVSKELEQLKRKEAELDSQKENL
NAQLHAVKVKKEELEKVTNQRIADLEKVAALTREEAREQLVTMLTEEAQTKASSQIKDIL
DEAKLSATKQAKKIVLDTIQRTATEHAVENCVSVFNIESDDIKGKIIGREGRNIRALESA
TGVEIVVDDTPEAIIISGFDPVRREVARLSLHRLVQDGRIHPARIEEVVAKTEKNIEEEI
VEIGERTCIDLGVHGLHPELIKMVGRMRFRSSYGQNLLQHSREVAKLSATMAAEMGLNAK
LAKRAGLLHDIGKVWPEEQELPHAVLGMEIAKRYKEHPEVCNAIGAHHDEIEMTSMISPI
VQASDAISGARPGARREVMDSYIKRLKDLEELALSFDGVNKCFAMQAGRELRVLVDADNV
DDSTAGKLSFDISQKIEKEMQYPGQIKITVIREMRAVNYAR
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgggagatatattatacataatcctagccgccctggtagggcttggtgcaggagccgcg
atagcgggtttattgattaaaaataaaaaccaaaaactcgaagaggagaccaaagagcgt
gttaaatccatgcttagagaggcagaaatcaatgccgaagccattaagaaagaccgaatt
cttgaagccaaagaaaagtatttgaagctcaaatcagaatttgatgaagaggtaaatacg
aagaagaatattatcattaccaatgaaaataaggtcaagcagagagaacaacatgtatcc
aaggagctggaacaattaaagagaaaagaagctgaactggatagtcaaaaagagaattta
aatgctcagctccatgcagtgaaagtgaagaaagaggagcttgaaaaagtaactaatcaa
cgaatcgcagacttggaaaaagtggcagctttgactcgggaagaagcccgagagcaattg
gtgaccatgctgaccgaagaggctcaaacgaaggcgtcttcccagatcaaggatattttg
gatgaggcgaaattgtcagcaaccaagcaagccaagaagattgtattggataccatccaa
agaactgctactgaacatgcagtagaaaactgtgtgtctgttttcaatatcgaaagtgat
gatatcaaaggtaaaatcattggtagagaaggtagaaatatccgtgctttggaatcggcg
accggcgttgagatagtcgtagatgatactccagaagcgatcattatttcgggctttgat
ccagttagaagagaggtagcgagattgtctcttcatagattggttcaggatggaagaatc
catccggcaaggattgaagaggtcgttgctaagaccgagaaaaacatcgaggaagaaatt
gtggagatcggagaaagaacgtgtatcgatcttggagtgcatggtcttcacccagagttg
atcaaaatggtcggaagaatgagattccgctcctcctatggtcagaacctgcttcagcac
tctagagaagtggcgaaattatctgctacgatggcagctgaaatgggactcaatgccaag
ctggccaagcgagcaggtttacttcatgatattggaaaagtgtggcctgaggagcaagaa
cttcctcacgcagttttggggatggaaatcgccaagaggtacaaggaacaccctgaggtt
tgcaatgcgataggcgcacaccacgatgagattgaaatgacttccatgatctcgccaatc
gttcaagcttcggatgctatctctggcgcaagacctggtgcaagacgtgaagtaatggat
agttacatcaagcgtctgaaagatttggaagagcttgccttaagtttcgacggagtaaat
aaatgttttgcaatgcaggcaggaagagaacttcgcgtgttggtagatgcagataatgtg
gatgattctacagcgggtaagctgtcatttgatatttcacaaaagatagagaaggaaatg
caataccctggacagattaaaatcaccgtgatcagggaaatgagagcagtgaattacgcg
aggtaa
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