Algoriphagus halophilus: V8V91_26865
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Entry
V8V91_26865 CDS
T10878
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ahap Algoriphagus halophilus
Pathway
ahap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ahap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V8V91_26865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ahap03019
]
V8V91_26865
03009 Ribosome biogenesis [BR:
ahap03009
]
V8V91_26865
Enzymes [BR:
ahap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
V8V91_26865
Messenger RNA biogenesis [BR:
ahap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V8V91_26865
Ribosome biogenesis [BR:
ahap03009
]
Prokaryotic type
rRNA helicases
V8V91_26865
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DeaD_dimer
Cas3-like_C_2
INTS7_C
Motif
Other DBs
NCBI-ProteinID:
XFE74506
LinkDB
All DBs
Position
complement(4966405..4968138)
Genome browser
AA seq
577 aa
AA seq
DB search
MENTLKFSDLGISDEILKSVEEMGYTQPSQIQSQAIPFVLEGRDVIGQAQTGTGKTAAFA
IPIIDLVDPDLNHPQAIILCPTRELAVQVEGEIQKLAKFHRRINSVAIYGGESIDKQIRT
LRKGVQIVVGTPGRVQDHINRGTLKLDNAGIIVLDEADEMLDMGFRDDIEAILQEMPEER
QTVFFSATMAKPILDLTRKYQNNPEIIKVAKKELTVDRIEQVFYEVKPSLKLELMARLMT
VNNYALSVVFCNTKRMTDEATESLGSKGILAEALHGDLSQAQRDKVMNKFRKGLCTVLVA
TDVAARGIDVDNVEAVFNYDLPLDDESYVHRIGRTGRAGKSGIAINFVTGRRDFGKIRDL
ERFTKATITKMTPPSVAELIELKKAQFVKDVHKILSKEEDNQIFEATVGQLLTEGLSIEQ
IALGLMKLQMGDVVKEMRDQDFSLSSYGDRRREGGREGGRDGGRDRFGRGERGDRRGGER
GERGGRREGGRRPERVRDANMARLFINLGKRDRIRPNDIVGAIAGEAGVPGRSIGGIDIY
DNFSFVDVPQKDADHVIKVMKHNTIKGKNVNMEISKG
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatacactcaagttctctgacttgggaatttctgacgaaattcttaagtccgtg
gaagagatgggctatacccaaccttcccaaattcaatcacaagctattcctttcgtacta
gaaggtagagatgtcatcggacaagctcaaaccggtactggaaagactgcagcttttgct
attccaattattgatttggtagatccagatctaaatcacccacaggctatcatcctttgc
cctactcgtgaacttgcagttcaagtagaaggtgaaatccagaagttggctaaattccat
agaaggatcaattctgtggcgatctatggaggtgaatcaattgacaagcaaatcagaacc
cttagaaaaggagttcagatcgtagtaggtactccaggtcgtgtacaagatcacatcaac
cgtggtactttgaaattggataacgccggaatcatcgtattggatgaagcggatgaaatg
ttagatatgggcttcagagatgatattgaagcaattttgcaggaaatgcctgaagaaaga
caaactgttttcttctccgctaccatggcaaagcctattctagatttaacaagaaaatat
caaaacaaccctgaaatcatcaaggttgctaagaaagaattgacggtagatcgtatcgag
caagtgttctatgaagtgaaaccttcattgaaattggaattgatggctcgattgatgacc
gtaaataactatgcattgagcgtagtattctgtaataccaaaagaatgacagatgaggct
actgaatctcttggttcaaaaggtatccttgctgaagcacttcatggagatttatctcaa
gcacaaagagataaagtaatgaacaaattccgtaaaggtctatgtaccgttctagttgca
actgatgttgctgcaagaggaattgatgttgacaatgtggaagcggttttcaattacgat
ttgccattggacgatgagtcttatgtacaccgtatcggaagaactggacgtgctggaaaa
tcaggtattgccatcaattttgttactggaagaagagattttggaaagatcagagatttg
gaaagatttaccaaagctacgatcaccaagatgactcctccgtctgttgctgaattgatt
gagttgaagaaggctcaatttgtaaaagacgtgcataaaatattgagcaaagaagaggat
aatcaaatcttcgaagctactgtaggtcaactattgacagaaggactttctatcgaacag
attgcccttggtttgatgaaacttcagatgggagatgtagtgaaagaaatgagagaccag
gacttcagcttaagctcctatggagacagaagaagggaaggcggccgtgaaggtggtcgt
gatggaggaagagatagattcggacgtggcgaaagaggtgatagacgcggtggcgaaaga
ggagaaagaggcggaagaagagaaggtggaagaaggcctgaaagagttagagatgccaac
atggctcgtttattcatcaatttaggtaaaagagatagaatccgtccaaatgatatcgta
ggagcaattgctggtgaagccggcgttccaggaagatctattggaggcatcgatatatat
gacaacttctcctttgtggatgtgcctcaaaaagatgctgatcacgtgatcaaagtaatg
aagcacaataccatcaaaggcaagaacgtcaatatggaaatttcaaaagggtaa
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