Anaeromicropila herbilytica: bsdtb5_02650
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Entry
bsdtb5_02650 CDS
T08766
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ahb
Anaeromicropila herbilytica
Pathway
ahb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ahb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
bsdtb5_02650 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ahb03400
]
bsdtb5_02650 (mfd)
Enzymes [BR:
ahb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
bsdtb5_02650 (mfd)
DNA repair and recombination proteins [BR:
ahb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
bsdtb5_02650 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
SNF2-rel_dom
UB2H
RecG_dom3_C
nSTAND3
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
BCN28970
UniProt:
A0A7R7EHT6
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All DBs
Position
347705..351241
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AA seq
1178 aa
AA seq
DB search
MKTFYEPLNELKEYHDIKQSLLLRSVPIQITGCIDSQKCHLMSALSSDYKNTLIITYNEM
KAKEIYDDYRLYNKDVLLYPAKDIMFYSADIHGNAIVKERLNVLKSLIEGKGTTVVMTID
GGMDHILPLEMIEKRVLLIEEGTTLDLEKLKEKLVFLGYERTGQVEGQGQFAIRGGIIDI
FTLTEEVPYRIELWDDEIDSIRTFDINSQRSIERVQNVKVYPAAELILDETTLLTGIQKI
EKEKEAYQKALRDQLKTEEAHRIDTIIEEFIENMKAFQGSLGIDSYIKYFYEDTISFFDY
FNNIDSVIFLDEPSRIGEKGEAVELEFREGMIGRIEKGYILPGQVDVIYGVKELLAKLSH
ANLVNLSTMDYKVTQFNIRNKYDIAAKSVNSYNNNFEVLVKDLEKWKKSGYRVVLLSSSR
TRAKRLSDDLREYDLNAFYSEDLERGIQSSEIMVAAGNVHRGFEYPMIQFVVISESDIFG
AEKKKARKKSSYEGKKIQSFTDLNIGDYVVHENHGLGIYKGIEKIEVDHVTKDYIKLEYG
NGGVLYILATGLDVIQKYASSEAKRPKLNSLGSQEWKNTKTKVRKAVKEIAKELVELYAI
RQSKKGYQFGEDTVWQNEFEEMFPYDETRDQLKAIEETKMDMESTKIMDRLICGDVGYGK
TEIAIRAAFKAVADGKQVVYLVPTTILAQQHYNTFVQRMKDFPISIDMLSRFRTPAQQKK
ALERLKKGSLDIIIGTHRVLSKDVEFKDLGLLIVDEEQRFGVTHKEKIKQLKGDVDVLTL
SATPIPRTLHMSLIGIRDMSVLEEPPVDRMPIQTYVLEQNDEIVREAINRELARGGQVYY
VYNRVTNIDEVALTIQKLVPEANVAFAHGQMSERELEKIMFGFINGEIDVLVSTTIIETG
LDIANVNTMIIHDADKLGLSQLYQLRGRVGRSNRSSYAFLMYRRDKMLKEIAEKRLQAIK
EFTELGSGFKIAMRDLEIRGAGNLLGAQQHGHMESVGYDLYCKMLNEAVVALKGGIEEED
IFDTTVDIGVDAFIPATYIKSEFQKLDMYKRIAGIENEEEFLDMQEEMLDRFGDLPQSVN
NLLNIALLKGIAHNAYVSQIIHKVESIKFAMYPKAKVDLNKIPLLLDKYKNVMKFSPEAT
PYFLYELKQGKKVIKLDNYTLFETIKSILNDIDELIQR
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaacattttatgaaccgttaaatgaattaaaagaatatcatgatataaagcaaagt
ctcttgcttcgaagtgttcctatacagattaccgggtgtatcgattctcaaaaatgtcat
ttgatgagtgctttatctagtgattataaaaatacattaattatcacttacaatgagatg
aaagcaaaagaaatctatgacgattatagactgtataataaggatgtccttttatatcca
gcaaaggatattatgttctacagtgctgatatccatggtaatgcaatcgtaaaagaacgt
ttgaatgtattaaaatcgttaatagaaggcaaaggaactacggttgttatgacgattgat
ggcggcatggatcacattcttccgctagaaatgattgaaaagagggttcttctaatagaa
gaagggacaactctggatctggaaaagttgaaggaaaaactagtttttttagggtatgag
agaactggtcaagttgagggacaaggacaatttgcaattcgtgggggaattattgatatc
tttaccctaacagaagaagttccttatcgaattgaattatgggacgatgaaatcgactca
ataagaacctttgatataaatagtcaaaggtctattgagcgtgttcagaatgttaaagta
tatccagcagcagaattgatccttgatgagacaaccttattaacaggcattcagaagatt
gagaaagagaaagaagcatatcagaaggctttacgagatcaacttaagactgaggaagca
catcgaattgatactattattgaagaatttatagaaaatatgaaagcatttcaaggttca
ttaggtattgatagttatatcaagtatttttatgaagatacgatatcattttttgattat
tttaataatattgattcagtaatattcttagatgaaccatccaggattggtgaaaaggga
gaagcggttgaattagagttccgtgaaggaatgattggaagaattgagaagggatatatt
cttccaggccaagtagatgtgatctatggggttaaggaactcttagctaaattaagtcac
gcgaatctagtaaatttaagtacgatggattataaagttactcaatttaacattcgaaat
aaatatgatatagcagctaaatctgtaaattcctataataataattttgaagtgttagta
aaagacttggagaagtggaagaaaagcgggtatcgagtggtgttactttcatcttcgaga
acaagggcaaaaaggcttagtgatgatcttagggaatatgatcttaatgcattctatagt
gaggacttagagagagggatacaaagtagtgagatcatggtagcagcagggaatgttcat
cgaggattcgaatacccgatgatacaatttgttgtaatctcagaaagtgatatctttggt
gcggagaaaaagaaggctagaaaaaagagtagttatgaaggtaagaagattcagagcttt
accgatcttaatattggagattatgtagtgcacgagaatcatggacttggtatctataag
ggtattgaaaagattgaagtagatcatgttactaaggattatattaaattagaatacgga
aatggtggcgtgttgtatattcttgcaacgggccttgatgtaatacaaaaatatgcgagc
tcagaagccaagcgcccgaaactaaatagcttgggttcccaagaatggaagaataccaag
acaaaggttcgtaaagcagtcaaagagattgcaaaagagctggttgaattatatgcaata
agacaatctaaaaaagggtatcaatttggtgaggatacggtatggcagaatgaatttgaa
gagatgttcccatatgatgagaccagagatcaactaaaagccattgaagaaaccaaaatg
gatatggagagcaccaagattatggatcgcttaatctgtggtgatgttgggtatggtaag
actgaaatagcaataagggcggcatttaaagcagttgcagatggtaaacaagtggtatat
ctagttcctactacaatcttagcacaacagcattataatacctttgttcaaaggatgaag
gactttccaattagtatcgatatgctatcaaggtttcgaacaccagcacaacagaagaaa
gcactagaaaggcttaaaaagggttcacttgatatcattattggaacgcatagagttcta
tccaaagatgttgaatttaaggatttaggcttattaatcgtcgatgaggagcaacgtttt
ggtgtaacacataaagagaaaatcaagcaactaaagggtgatgtagacgttcttacttta
tctgcaactccaattcctagaacactgcatatgagcttaataggaattagagatatgagt
gtattagaagaaccaccagtagatcgtatgcctattcagacttatgtattagaacaaaat
gatgaaattgtaagagaagcaattaatcgcgaacttgcaagaggtggccaagtatactat
gtttataatcgagttacaaatattgatgaagtagcattgacgatacaaaagcttgtacct
gaggcaaatgtagcatttgctcatgggcaaatgagtgagcgagaattagaaaagatcatg
tttggttttattaatggagaaattgacgttcttgtttcaactaccatcattgaaacaggt
cttgatattgctaatgttaatacaatgattattcatgatgcagataagttaggtttatca
caactatatcaattacgtggacgtgttggaagatcgaatcgttcctcctatgcttttcta
atgtaccgtagagacaagatgttaaaagagattgcagagaagagacttcaggcaataaaa
gaatttacggaactaggttctggatttaaaatagcaatgagagacttagagattcgtggt
gcaggtaaccttttaggagcacaacaacatggacatatggagtcggtaggttatgacctt
tactgtaagatgttaaatgaagctgttgttgcattaaagggtggaatagaggaagaagat
atctttgacacaactgttgatattggtgtggacgcgtttattcctgctacttatattaag
agtgaatttcaaaagcttgatatgtataagcgtattgcaggtattgagaatgaagaggaa
ttcttggatatgcaagaagagatgttagatcgctttggagacctaccacaatcagtgaat
aacctgttaaatattgctttattaaaagggattgctcataatgcttatgtgagtcagatc
attcataaagtggagagtattaagttcgcaatgtatccaaaggctaaggttgacctgaat
aagatcccactgctcttagataaatataaaaatgtaatgaagttttcaccagaagctacc
ccatatttcttatatgaattaaaacaaggaaaaaaggttataaagctagataattatacg
ttatttgaaaccataaagagcattcttaatgatattgatgaattgatacaaagataa
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