Anaeromicropila herbilytica: bsdtb5_12170
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Entry
bsdtb5_12170 CDS
T08766
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ahb
Anaeromicropila herbilytica
Pathway
ahb03410
Base excision repair
ahb03430
Mismatch repair
ahb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ahb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
bsdtb5_12170 (recJ)
03430 Mismatch repair
bsdtb5_12170 (recJ)
03440 Homologous recombination
bsdtb5_12170 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ahb03400
]
bsdtb5_12170 (recJ)
DNA repair and recombination proteins [BR:
ahb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
bsdtb5_12170 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
bsdtb5_12170 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
bsdtb5_12170 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DUF6671
ATG2_CAD
Motif
Other DBs
NCBI-ProteinID:
BCN29922
UniProt:
A0A7R7EJG6
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All DBs
Position
1437041..1438810
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AA seq
589 aa
AA seq
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MEKWFIKNKKADFSLIAKQYHISEILARLIVNRNISSKEELNQYLHGTLQDMNNPYELKD
VRKASNLLIDKIREGKRIRVVGDYDVDGVVATYVLYTALKRCGANVDYEIPDRMKDGYGI
NISIIDAAYAEKIDTIITCDNGIAAINQVKHAKELGMTVIITDHHDIPFVEEGVDRKYIV
PEADAVINPKQLDCTYPFEGICGATVAFKLIQVLYEECGIEKWESDRLIEFVSIATVCDV
MDLVNENRIIVKHGLKMLSSTSHLGLKALIEESKLNANCITVYHLGFIIGPCINASGRLE
SAKVGLRLLLSEDENEARLLAKKLKNLNDERKDLTSEGLVKAVEIIENSEIKSDKVIVVY
IEDCHESLAGIIAGRIKEKYNKPTIVLTKAEEGVKGSARSIEEYNMFEELNKCKHLLSKF
GGHPMAAGLSLEEENIELLRKELNGYTTLTDYDLQRKVSFDMVLPFQHISYNLIDEIGKL
EPYGKGNTKPLFAIKDVNVLKAFVLGANRNVIKLTVRDESSDYQSSYSAMIFGDVEGFER
KVIDKYGEEQLKALYQGIQNMVRMDLVFYPDINEYQGNKNIQVIVQNYR
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaatggtttatcaaaaataagaaagcagatttttcactaatagctaagcaatat
catattagcgaaatcttagctagattaattgtaaatagaaatataagtagcaaggaagaa
ttaaatcaatatcttcatggtactctacaagatatgaataatccatatgagttaaaggat
gttagaaaagcaagtaatctattaatagataagataagagaaggaaagagaattcgagta
gttggtgattatgacgtagatggtgttgtagcaacttatgttctatatacagcgctaaaa
cgatgtggtgccaatgttgactatgagataccagatcgaatgaaggacggatatggaatc
aatatatcaatcatagatgctgcttatgcagaaaagattgatactattattacttgtgac
aatggtatcgcagcaattaatcaggtaaaacatgcaaaagaattgggcatgactgtaatt
attacagatcatcatgatatccccttcgttgaagagggagtggataggaaatatattgta
ccagaagcggatgctgttattaatccaaaacaattggattgcacttatccattcgaaggt
atttgcggggcaacggtggcatttaaattaatccaagtactatatgaagaatgcgggatt
gaaaaatgggaatccgacagattaattgaatttgtctccattgcaacggtatgtgatgtt
atggacctagtgaatgaaaatagaatcattgtaaagcatgggctaaagatgctatcatct
acttctcatttaggactaaaagctttaatcgaagaatcaaaattgaatgccaattgcatt
acagtatatcatcttggatttataattggaccatgtatcaatgcttcgggacgcctagaa
tctgcaaaagtaggtttacgtttattgctatcagaagatgagaatgaagcaagattatta
gcaaaaaaattaaagaatttaaacgatgaaagaaaagacttaacaagtgaaggattagta
aaagcagttgagataattgagaattcagaaataaaatcagataaagttattgttgtatac
attgaagattgccatgaaagtctagcaggtattatagcaggaagaattaaagaaaaatat
aataaacctacgattgttttaacaaaagcggaagaaggtgtaaaaggatccgccagatca
attgaggaatacaatatgtttgaagaattaaataaatgtaagcatttattatctaaattt
ggaggacatccaatggctgctggactgtcattagaagaagaaaatattgagttattgagg
aaagaactcaatggatatactaccttaacagattatgatctacaaagaaaagtatctttt
gatatggtcttaccgtttcaacacattagctataatctaatcgatgagatcggaaaatta
gaaccgtatgggaaaggaaataccaagcctctctttgcaataaaagatgttaatgtatta
aaagcatttgtattaggtgctaatcgaaacgttataaagcttactgtaagagatgaaagt
tctgactatcaatcaagttattctgcaatgatttttggagatgtagaagggtttgagcga
aaagttattgataaatatggtgaagagcaattgaaagccttgtatcaagggatacagaac
atggtaagaatggatcttgtattttatcctgatatcaatgaatatcaaggtaacaagaac
attcaagtaattgtacagaattatcgttga
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