Aristaeella hokkaidonensis: JYE49_04730
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Entry
JYE49_04730 CDS
T09243
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ahc
Aristaeella hokkaidonensis
Brite
KEGG Orthology (KO) [BR:
ahc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ahc03032
]
JYE49_04730 (topA)
03400 DNA repair and recombination proteins [BR:
ahc03400
]
JYE49_04730 (topA)
Enzymes [BR:
ahc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
JYE49_04730 (topA)
DNA replication proteins [BR:
ahc03032
]
Prokaryotic type
DNA Topoisomerases
JYE49_04730 (topA)
DNA repair and recombination proteins [BR:
ahc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
JYE49_04730 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_3
DNA_ligase_ZBD
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
QUC68006
LinkDB
All DBs
Position
complement(1024035..1026158)
Genome browser
AA seq
707 aa
AA seq
DB search
MATNKQKLIIVESPAKAKTISKYLGKGYKVEASQGHVCDLPKSQLGVDIDHDFDLKYITI
RGRGDILSRIRKEAKNASQIYFATDPDREGEAISWHLFHVLGVDEKSPCRIEFNEVTKKA
VQAAIKKPRKLDMGRIDAQQARRALDRLVGYKISPLLWVKVKKGLSAGRVQSVATRMVVE
REREIDNFIPEEYWDITADCTVKGEKKPVSFSARFTTLDGQKKPVSNKAEAEEIRALIES
GDFTVTDIKKKEKKRQPAPPFTTSSLQQEAGRKLSFTTAKTMQVVQQLYEGVDLQGEGAQ
GLVTYIRTDSVRISDDAMTALRAFIPEKYGKEYLPKEKNEFKGRKNAQDAHEAIRPTDVT
RTPDSIKNSLSREQFMLYRLIYNRFVASQMAPAVYETLSAEITDQRVGLRFYGEHKIFAG
FTTLYEEGTDESEDNVEMTLPALKEGQKISVKQINTDQHFTQPPSRYTEASLVRTLEENG
IGRPSTYAPTITTIIARGYVSREKKRLFPTELGIMVTEMMEKYFTRIVDTEFTAFMEEKL
DAVEEGQQDWKQILRDFYPDFISTLSVAEKEIEKVEVKDDVSDVPCDKCGAMMVYKMGRF
GRFLACPNFPECRNTMPILTYIDAACPVCGKRLLEKTSKKNRKFYGCEGYPECDFVSWDK
PANEKCPQCGHYMIEKRNNKGETIHLCTNENCRFKKVVTVSGEEDNE
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccaacaaacagaaactgattatcgtggagtcccctgcaaaggccaaaaccatc
agcaagtatctgggcaaaggatataaggtggaagcctcccaggggcatgtatgcgatctg
cccaagagccagcttggtgtggatatcgatcatgactttgatctgaaatacatcacgatc
cgtggacgcggcgatatcctgagccgtatccgcaaagaagccaagaacgcttcccagatc
tatttcgcgacagaccctgaccgcgaaggggaagccatcagctggcatctgtttcacgtg
cttggcgtggatgaaaaatctccctgccggattgaattcaatgaggtcaccaagaaagcg
gttcaggccgcaatcaaaaagccgagaaagctggatatgggccggattgacgcccagcag
gcccgcagggcgctggatcggctggtcggctataaaatcagcccgctcctctgggtcaaa
gtgaaaaaaggcttgtccgcaggccgtgtgcagagcgttgcaacccgtatggttgtggaa
cgcgaacgtgaaattgacaatttcatcccggaagaatactgggacatcactgccgactgt
actgtcaagggtgaaaagaaaccggtcagtttcagcgccaggtttaccaccctggacgga
cagaaaaagccggtcagcaacaaggctgaagcggaagagatccgggccctgattgaatcc
ggggactttaccgttacagatatcaagaaaaaagaaaagaaaagacagcctgctccgcct
ttcaccacttccagcctgcagcaggaagccggcagaaagctcagctttacaaccgccaaa
acaatgcaggttgtccagcagctgtatgaaggcgtggacctgcagggtgaaggcgcccag
ggtctggtgacctatatccgtaccgacagcgtccggatcagcgatgacgcaatgaccgcc
cttcgggcattcattccggaaaaatacggcaaggaatacctgccgaaagagaaaaacgag
ttcaagggccgcaaaaacgctcaggacgcccatgaagccatccggccgactgacgtgacc
cgtacgcctgattccatcaagaactccctgagccgggagcagtttatgctctacaggctg
atttacaaccgctttgtcgccagccagatggctcctgccgtctatgaaaccctttccgcc
gagattaccgaccagcgggtcgggctcaggttctacggcgaacataagatctttgccgga
tttacgaccctgtatgaagagggaacagacgagagcgaagataatgtggagatgacactg
cccgccctgaaggaaggacagaagatctccgtgaaacagatcaataccgatcagcatttc
acccagccgccgagccgctataccgaagcaagccttgtacgtacgcttgaagaaaacggt
atcggccggccttccacctatgcgccgacaattaccaccatcatagcgcgcggatacgta
tccagggaaaagaagagactgttcccgacagagctcggcatcatggtaaccgagatgatg
gaaaagtactttacccggatcgttgatacagaattcaccgctttcatggaagaaaaactg
gacgcggtggaagaaggccagcaggactggaagcagattctccgtgatttctatcccgat
tttatctccacactttccgttgctgaaaaagagattgaaaaagtggaagtcaaggatgac
gtcagcgacgtaccctgcgacaaatgcggtgcgatgatggtttataagatgggcagattc
ggccgcttcctggcatgcccgaatttccctgaatgccggaataccatgccgatcctgaca
tatattgacgcggcctgcccggtatgcggcaagcgcctgcttgaaaaaacgagcaagaaa
aaccggaaattctacggctgcgaaggatatccggaatgcgactttgtcagctgggataaa
cccgccaatgaaaaatgcccgcagtgcggacactatatgattgaaaagagaaacaacaag
ggcgaaaccatccatctgtgtacaaatgaaaactgccgcttcaaaaaagtggttaccgtc
agcggggaagaagacaatgagtga
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