Aristaeella hokkaidonensis: JYE49_05175
Help
Entry
JYE49_05175 CDS
T09243
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ahc
Aristaeella hokkaidonensis
Pathway
ahc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ahc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JYE49_05175 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ahc03021
]
JYE49_05175 (rho)
03019 Messenger RNA biogenesis [BR:
ahc03019
]
JYE49_05175 (rho)
Transcription machinery [BR:
ahc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
JYE49_05175 (rho)
Messenger RNA biogenesis [BR:
ahc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JYE49_05175 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
QUC68086
LinkDB
All DBs
Position
1113945..1115708
Genome browser
AA seq
587 aa
AA seq
DB search
MTLSDLNGMTVLQLRKLARENSVVLGAGIDKAGIIEKLLPVLSDETEQPAAQPAEAPAPV
EAEPKYQAAWHNTDTPRYNVRPAYQAPGSASRPAWQSTSPSGQHLPHDQQHVQPMRPGSF
TPRFGPAASVQPAAPAAQSSEPAEQPHPPVVSPLPEKRISIGSETGFGPRSFGPNAVPHT
PARTSEPFAPPFQAQDTGIQAPSLEELLASGDYEEGGGILELHPDGYGFLRNASFQPSTK
DIYVSMAQIRRFGLRTGDMIKGKIRPQREGDKYAALLYISSVNDVPEEEAFNRPAFDELT
PVYPSRRISLECRDGKSFPDMRLIDLIAPLGFGQRGLMLCPPQTGKAEIMQHFAKVVCEN
YPDVQVLMLLIDVTPEDATMVRETVPCTVLASTFDQTPEAHLRLSEIVLERAMRLVEQKK
DVVLIVDSLTRLAKIYTTAAAQQGRSLPGMVNPSSLFRAKRLFGAARACKEGGSLTVLAA
MDISTGSKVDDSVVEEFKGTANMELTLDQGVARAGVTPSLNLQQSFTKNADILLDNKQKE
GLSLIRTLLGSTSSAVAIPQLESMMDKTDTNEALLLKMKDWFALMNR
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgactctcagcgatctcaatgggatgactgtcctgcagcttcgtaagctggcccgtgaa
aactccgtcgtactcggtgccggcatcgataaggcaggcattattgaaaaactgctgccc
gttctgtcagatgaaacagaacagccggctgcacagccggcggaagcgcccgctcctgtc
gaagctgaacccaaataccaggccgcctggcacaatacggatacgccgcgctataacgtg
cggcctgcctatcaggctcccggttccgcttcccgtcccgcatggcagagcacttctcct
tccggacagcatcttcctcatgatcagcagcatgtacagcctatgcgtcccggcagcttt
accccccgcttcggccccgctgcctctgtacagcctgcagcgcctgctgcccagtcttct
gaaccggctgaacagccccatcctcccgttgtatctccgcttcccgaaaagcggatcagc
atcggatctgaaaccggcttcgggccccgttctttcggacccaacgcggtacctcatacc
cccgcccgtacatctgagccttttgcgcctcctttccaggcacaggataccggcattcag
gcgccctccctggaggagctgcttgcttccggtgattatgaagaaggcggcggcatcctg
gaactgcatcccgacggatacggtttcctgcgcaacgcctccttccagccctccacaaag
gatatctatgtgtctatggctcagatccgccgtttcggtctccgtaccggcgatatgatc
aaaggcaaaatcaggccccagcgtgaaggcgataaatacgctgccctgctttatatctcc
agcgtcaatgacgtgcctgaggaagaagccttcaatcgtcctgcctttgatgagctgact
cctgtttatcccagccgccggatttccctggaatgcagggacggtaaatctttcccggat
atgcggctgatcgacctgattgccccgcttggtttcggccagaggggcctgatgctttgc
cctccccagaccggcaaggccgaaatcatgcagcactttgccaaggttgtctgcgagaat
tatccggatgtccaggtactcatgctcctgattgacgtgactcctgaagacgccaccatg
gtgcgtgaaaccgtaccctgcaccgtcctggcctccacttttgaccagacgccggaggct
catcttcgtctttctgaaattgtcctggaacgtgccatgcgtcttgtggagcagaagaag
gatgttgtcctgattgtggacagcctcacccgcctggcaaagatctataccaccgccgca
gcccagcagggacgcagtcttcccggcatggtgaatccctccagtcttttccgtgccaag
cgccttttcggcgctgcccgtgcctgcaaggaaggtggcagcctgaccgtgctggcagcc
atggatatctccacgggatccaaggtggacgattccgttgtggaagaattcaaaggcacc
gccaatatggaactgaccctggatcagggtgtggcccgcgccggtgtgactccttccctg
aacctgcagcaaagtttcaccaagaatgccgatatcctgttggacaacaaacagaaagaa
gggctttccctgatcaggacgctgctgggcagcacctcttccgcggtggccataccccag
ctggaatccatgatggataaaaccgataccaacgaagcgcttctgctgaagatgaaagac
tggtttgccctgatgaatcgctga
DBGET
integrated database retrieval system
