Aeromonas hydrophila YL17: AI20_03855
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Entry
AI20_03855 CDS
T03186
Name
(GenBank) DNA topoisomerase I subunit omega
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ahd
Aeromonas hydrophila YL17
Brite
KEGG Orthology (KO) [BR:
ahd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ahd03032
]
AI20_03855
03400 DNA repair and recombination proteins [BR:
ahd03400
]
AI20_03855
Enzymes [BR:
ahd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
AI20_03855
DNA replication proteins [BR:
ahd03032
]
Prokaryotic type
DNA Topoisomerases
AI20_03855
DNA repair and recombination proteins [BR:
ahd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AI20_03855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
AHV34361
LinkDB
All DBs
Position
complement(4586225..4588846)
Genome browser
AA seq
873 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKDYVVKSSVGHVRDLPTSGSASNEPKKPVIRGIKLSES
EKAAKERNALFSRMGINPTAGWQANYQILPGKEKVVSELQSLAEKADTIYLATDLDREGE
AIAWHLREIIGGDDSRYKRVVFNEITKTAIQEAFAQPSELNIHRVNAQQARRFLDRVVGY
MVSPLLWKKLARGLSAGRVQSVAVRLIVDKEREIKAFVPVEFWDLNADLLTGDNADLRME
VVSRNGADFKPVTQAETFAAVAALEGVDYKVVNREDKPTGSKPSAPFITSTLQQAASTRL
SFGVKKTMMMAQRLYEAGYITYMRTDSTNLSKEAVEAVREYIGEQYGAAYLPSDPNLYGA
KANAQEAHEAIRPSSVLVTAEMLEGMEPDAMRLYDLIWRQFVACQMTPAQYDSSTLTVKA
GEFELKARGRTLRFAGWTKALPPMGRKGEDSQLPAVTVGEVLKLVKLDPRQHFTKPPARF
TEAALVRELEKRGIGRPSTYASIISTIVDRGYVRVESRRFFAEKMGEIVTDRLVENFVEL
MNYEFTAKMEDKLDGIAEGSLEWKKVLDAFYAEFTQELEKADLPVEEGGMRANQMVLTDI
DCPDCGRKMGIRTATTGVFLGCSGYALPPKERCKKTINLVSADEFVSATDGDEAETEALR
AKHRCGVCGTAMDAYIIDDSRKLHVCGRNPDCDGYEIEKGQFKLKGYEGPSIECDRCGSE
MQLKNGRFGKYMGCTNDTCKNTRKILKNGDIAPPKEDPVPLPELKCTQSDAHFVLRDGAA
GLFLAASNFPKSRETRAPLVEELKRFKERLSPKHQYLADAPASDPDGNASIVRFSRKTKE
QYVMTEVNGKATGWTAHYDNGKWQESLAKSKKA
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcactggtcatagtggagtctccggccaaggccaagaccatcaacaaatat
ttgggcaaggactacgtggtgaaatccagcgttggtcacgtgcgcgatctgccgaccagc
ggcagcgccagcaacgagcccaaaaaacctgtcattcgcggcatcaagctgagcgaatca
gaaaaggctgccaaggagcgcaatgccctgttctcacggatggggatcaatccgaccgca
ggctggcaggccaactaccagattttgcccggcaaggaaaaagtggtcagcgagttgcag
agtctggccgagaaggccgacaccatctatctcgcaaccgacttggatagagagggggaa
gcgatcgcttggcacctgcgcgagatcatcggcggcgacgacagccgctacaagcgcgtg
gtgttcaacgagatcaccaagaccgccatccaggaggcgttcgcccagccgtccgagctg
aacattcaccgcgtcaatgcccagcaggcccgtcgtttcctcgaccgggtggtgggctac
atggtctccccgctgctctggaagaagctggcccgcggcctctccgccggccgggtacag
tccgtcgcggtgcgcctcatcgtcgacaaagagcgcgaaatcaaggccttcgtgccggtg
gagttctgggatctcaacgccgacctgctgaccggtgataacgccgatctgcggatggag
gtggtcagccgcaacggcgccgacttcaagccggtaacccaggccgaaaccttcgccgcc
gtggccgccctggaaggggtcgactacaaggtggtgaaccgggaagacaagccgaccggc
tccaaaccgtccgcccccttcatcacctccaccctgcagcaggcggcctccacccggctg
agcttcggggtcaagaagaccatgatgatggcccagcgcctctatgaagcgggttacatc
acctatatgcgtaccgactcaaccaacctcagcaaagaggcggtcgaggcggtgcgggaa
tacatcggcgagcagtatggcgccgcctacctgccgagcgatccgaacctgtacggtgcc
aaggccaatgcccaggaggcccacgaggcgatccgcccctccagcgtgctggtgacggcc
gagatgctggaagggatggagccggacgccatgcggctctatgacctcatctggcgtcag
tttgtcgcctgccagatgaccccggcccagtacgactcctccaccctgaccgtcaaggcg
ggcgagttcgagctcaaggcgcgcggccgcaccctgcgcttcgccggttggaccaaagcg
ctgccgcccatgggccgcaagggtgaagacagccagctgccggcggtgaccgtcggcgaa
gtgctgaaactggtcaaactggatccgcgccagcacttcaccaagccgcccgcgcgcttc
accgaagcggcgctggtgcgcgagctggagaagcgcggcatcggccgtccctccacctac
gcctccatcatctccaccatcgtcgaccgtggttatgtgcgggtcgagagccgccgtttc
ttcgccgagaagatgggtgagatcgtcaccgaccggctggtggagaactttgtcgagctg
atgaactacgagttcaccgccaagatggaagacaagctcgatggcatcgccgaggggagc
ctggagtggaagaaggtgctggacgccttctacgccgagttcacccaggagctggaaaaa
gcggatctgccggtggaagaggggggcatgcgtgccaaccagatggtgctgaccgacatc
gactgcccggattgcggccgcaagatgggcattcgtaccgccaccaccggggtcttcctc
ggctgctccggttacgcattgccgcccaaagagcgctgcaagaagaccatcaacctggtc
tccgccgacgagttcgtctctgccaccgatggtgacgaggccgaaaccgaggcgctgcgc
gccaagcaccgctgcggcgtgtgcggcaccgccatggatgcctacatcatcgacgacagc
cgcaagctgcacgtctgcggtcgcaacccggattgcgacggctacgaaattgaaaaaggc
cagttcaagctcaagggctacgaagggccgagcatcgaatgtgaccgctgtggcagcgaa
atgcagctcaagaacggccgcttcggcaagtacatgggttgcaccaacgacacctgcaag
aacacccgcaagatcctgaaaaacggtgatatcgcgccgccgaaggaagacccggtaccg
ctgccggagctgaaatgcactcagtccgacgcccacttcgtgctgcgtgacggtgccgcc
ggcctgttcctggctgccagcaacttccccaagtcgcgcgagacccgtgcgccgctggtg
gaagagctcaagcgcttcaaggagcgcctgtcgcccaagcaccagtacctggccgatgcc
ccggcgtcagatcctgacggtaacgcctccatcgtgcgcttcagtcgcaagaccaaggag
cagtacgtgatgaccgaggtcaacggcaaggcgaccggctggacggcgcactacgacaac
ggcaagtggcaggagagcctggccaagtcgaagaaggcgtga
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