Aeromonas hydrophila YL17: AI20_04175
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Entry
AI20_04175 CDS
T03186
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
ahd
Aeromonas hydrophila YL17
Brite
KEGG Orthology (KO) [BR:
ahd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ahd03400
]
AI20_04175
DNA repair and recombination proteins [BR:
ahd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AI20_04175
Archaeal homologous recombinant proteins
AI20_04175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
nSTAND3
ABC_tran
ABC_ATPase
MMR_HSR1
Hormone_1
DUF87
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AHV34422
LinkDB
All DBs
Position
complement(4509219..4512974)
Genome browser
AA seq
1251 aa
AA seq
DB search
MKILSLSGENLASLTGPFTIDFAGGALGAAGLFAITGNTGAGKSTLLDAICLALYDEMPR
FIANRKNVAEVGRMDDEEKLKANDVRGILSRGHASGFAEVQFRGCDGRVWLARWAVRRAR
NRAEGRFQAQERSLTDVASGQVFSGSKRELQERIDELVGLSWEQFRRAVILPQGEFAAFL
KSSADERSALLERMTGTELYSAISVQTHERAREEQQQLAAISQRLGDVALMDEATREQWV
SQQVSLATSLKHEQQQQQLMQDLRDLNGRIAAQLQACEEGEAALAAAEVAHGAAAPEREE
FARAEQAQVARADHDELARLTLEVQQQEKLLAELGPELGKLEEQTQQSALTEQQLLAEKI
AAEREWGALQPELKRAQELDTRIREKQQQLQKIQQEGTQEREVQLTLEQGWHQQRQQVDL
LKAQHQQWGAWLEEHKELAPVARQWQPLLTAMQDWAEDADRLQQLLTLREHKLRALRQLQ
HQLEQGQQERDYWLREQTRLQQQQHELQEQQWEGRLSKAQEQWQQQTEQLGQLRQLLELA
DYGRNHGEQHGRLQQEIAQLEQALGKLAILGDELAPARERLALQRDEARHALEQSRAIAS
FEQHRHILRDGEPCPLCGAEEHPYHQSQPQVAGILGQLAERARGLELEWERLNHQYIQCE
SERQELARQLAVRQQHLPELETRAGQLTLRWQQLGGDTLLGHPLPLGQSPIEWNELMSTL
LGRGQSLEQGLARSQQQLREAQQGQQQLQAVRQQLSQLASQHQQFEQQWQEADRQRIALE
GEVKAMGEQEATLRQRLEQGGNRLDEQMGGQPWRQWLGSQQWLEWQRACEAWLHGQSEWE
RLAGEIASLTPALSAQEARLQTQRELLHKLERDYKEHEQQRQGLVTSRGTCLGGEEIALI
EHRWQQRLQQLASELEMMQGAARALRERQTELKARLSHLEQEKQVSSRRRREVLGRWAAH
ASSLGIAEYDLRRLLAMSPDELKARRAALQALEDARAEARTRLTERQRALALEESKRDRY
REHHPELAALAPEELDSRLTALEAHCRALDEQLFQCKSTLAQAEAAALKAGTLQEELAAQ
QAVADHWQRLSDLIGSASGAKLRTFAQSLTLERLLLEANAQLAELSPRYRLERVPGTDLA
LQVVDLDMGDEVRSVDSLSGGESFLVSLALALALSSLSSRQTQVESLFIDEGFGTLDPDS
LDLALSSLDSLQAAGRQIGVISHVQTLVERIGVQVRVEALGGGESRVVLPG
NT seq
3756 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcctctctttgagtggtgagaacctggccagcctgaccggcccctttaccatc
gattttgccggtggtgccctgggggccgccggcctgtttgccatcaccggcaataccggc
gccggcaaaagcaccctgctcgatgccatctgtctggcgctctacgacgagatgccgcgc
tttatcgccaatcgcaagaatgtggccgaagtgggccgcatggatgacgaggagaagctc
aaggccaacgacgtgcgcggaatcctcagccgcggtcacgccagcggtttcgcggaggtg
cagtttcgcggctgcgacggccgggtctggctggcccgctgggcggtgcgccgggcccgc
aaccgcgccgaggggcgctttcaggctcaggagcgcagcctgaccgacgtggcgtcgggc
caggtgttcagtggcagcaagcgggagctgcaggagcgcattgacgagctggtggggctc
tcctgggagcagtttcgccgcgccgtcatcctgccgcagggggagtttgccgccttcctc
aagtcgagcgccgacgagcgttcggccctgctcgaacggatgaccggcaccgagctctac
tccgccatttcggttcagacccatgaacgggcgcgggaggagcagcagcaactggccgcc
atcagccagcggctcggcgacgtggcgttgatggacgaggcgacccgcgagcagtgggtg
agccagcaggtcagcctcgccaccagcctcaaacacgagcaacaacaacagcaactgatg
caggacttgcgcgacctcaacggccgcatcgccgcccagttgcaggcctgtgaggagggg
gaggcggcccttgccgccgcagaggtggcccacggtgcggccgctcccgagcgggaggag
tttgcccgcgccgagcaggcccaggtggcccgcgccgatcacgacgagctggctcgcctt
accctggaggtgcagcagcaggagaaactgctggccgagctcggccccgagcttggcaag
ctggaggagcagacccagcagagcgccctcaccgagcagcagctgctggctgagaagatc
gccgccgagcgcgagtggggcgccctgcagcccgagctcaagcgggcgcaggagctcgat
acccgcattagggaaaagcagcagcaactgcagaagatccagcaggagggaacgcaggag
cgggaggtgcagctcaccctggagcagggctggcaccagcagcgccagcaggtggatctg
ctcaaggcccagcaccagcagtggggcgcctggcttgaggagcacaaggagctggcgccg
gtggcccgccaatggcagcccctgctcaccgccatgcaggattgggccgaagatgccgac
aggctgcagcagctccttaccctgcgcgagcacaagctgcgtgccctcaggcagttgcag
caccagcttgagcaggggcagcaggagcgcgactactggctgcgtgagcagacccggttg
cagcaacagcagcacgagctgcaggagcagcagtgggaggggcgactgtccaaggcgcag
gagcagtggcagcagcagaccgaacagctgggtcagctgcgccagctgctggagctggcg
gactatggtcgcaatcacggcgagcagcatggtcgcctgcagcaagagatagcccagctg
gagcaggcgctcggcaagctggccatcctcggcgacgagctggcgccggcccgtgagcgg
ctcgccctgcaacgggacgaggcacgtcacgcgctggagcagtcccgcgccatcgccagt
ttcgagcagcatcgacacatcctgcgcgacggtgaaccctgcccgctgtgcggtgccgag
gagcacccctatcaccagagccagccgcaggtggcgggcattctgggtcagctggcggag
cgcgcccgcggcctcgagctcgagtgggagcggctcaatcaccaatacattcagtgcgag
agcgagcgccaggagctggcccgtcagctggcggtgcgccagcaacatctgcctgagctg
gagacccgtgccgggcagctgaccttgcgctggcaacagctcgggggcgataccctgctc
ggccatccgctgccgctaggtcagagcccaattgagtggaacgaattgatgagtaccctg
ctcggccgtggccagagcctggagcaggggctggcccgtagccagcagcaactgcgtgag
gcccagcaggggcagcagcagttgcaggccgtgcgccagcagctgagccagctggccagc
cagcaccagcagttcgagcagcagtggcaggaggccgaccgccagcgcatcgctctggag
ggggaggtgaaggcgatgggcgagcaggaggcgaccctgcgccagcgcctcgagcagggg
ggcaaccggctcgacgagcagatggggggccagccctggcgccagtggctgggcagccag
cagtggctcgagtggcagcgggcctgcgaggcctggctgcacggccagagcgagtgggag
cggctggctggcgagattgccagcctcaccccggccctgagcgcccaggaggcgcgcctg
cagacccagcgcgagctgctgcacaagctcgagcgcgactacaaggagcatgaacagcaa
cggcaggggctggtcaccagccgcggcacctgtctggggggcgaggagattgccctgatc
gagcatcgctggcagcagcggctgcagcagctggccagcgagctggagatgatgcagggg
gcggcccgcgccctgcgtgagcgccagaccgagctcaaagcccgtctcagccatctggag
caggagaagcaggtgagcagccggcggcggcgggaggtgctggggcgctgggctgcccac
gccagcagcctcggcattgccgaatatgacctgcgccgcctgctggccatgagtccggat
gagctcaaggcgcgccgcgccgccttgcaggcgctggaggatgcccgcgccgaggcgcgt
acccgtttgaccgagcggcagcgggcgctggcgctggaggagagcaagcgggatcgttac
cgcgagcatcaccccgagctggcagcgctggcgccagaggagctcgacagccggctgacg
gcgctggaggcgcactgccgtgccctcgacgagcagctgttccagtgcaagagcacgctg
gcccaggccgaggcggctgccctcaaggcaggcaccctgcaggaggagctggccgcccag
caggcggtggcggatcactggcagcgactctccgatctcatcggttcggccagcggcgcc
aagctgcgtaccttcgcccagagcctcaccctggagcggttgctgctggaggccaacgcc
cagcttgccgagctctccccccgctatcggctggagcgggtgcccggcaccgatctggca
ctgcaggtggtggatctcgacatgggggacgaggtgcgctcggtggactccctctccggc
ggcgagagcttcctggtgtcgctggcgctggcgctggccctctccagcctgtcgtcgcgc
cagacccaggtcgaatcgctctttatcgatgaaggcttcggcacgctcgatcccgacagt
ctggatctggcgctctcaagcctggactccctgcaggcggccggccgccagatcggggtc
atctcccacgtgcaaaccctggtggagcggatcggtgtgcaagtgcgggtggaggccctc
ggcggcggcgaaagccgggtggtgctgcccggatga
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