Aeromonas hydrophila YL17: AI20_08120
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Entry
AI20_08120 CDS
T03186
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ahd
Aeromonas hydrophila YL17
Brite
KEGG Orthology (KO) [BR:
ahd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ahd03019
]
AI20_08120
Enzymes [BR:
ahd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AI20_08120
Messenger RNA biogenesis [BR:
ahd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AI20_08120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
ResIII
AAA_23
AAA_30
PhoH
HA2_N
NTPase_1
NACHT
TsaE
T2SSE
AAA_11
AAA_25
SLFN-g3_helicase
ABC_tran
SRP54
Motif
Other DBs
NCBI-ProteinID:
AHV35154
LinkDB
All DBs
Position
complement(3566317..3570231)
Genome browser
AA seq
1304 aa
AA seq
DB search
MSLSIEALRRRLSACMNLDARRLSSRLYGVKKLPEAKQAAVLETIAADLDVAEARYQSRL
AGVPRVTYPDNLPVSQKQAEIAKAIEEHQVVIIAGETGSGKTTQIPKICLALGRGVKGFI
GHTQPRRLAARTVAARIAEEMESELGHYVGYKVRFTDQVSEQTHIKLMTDGILLAEIQND
RMLTQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPQRFSRHFNKAP
VIEVSGRTYPVEVRYRPLFVDKKSSDKSEGLEERDELQGIFDAVEELAREGLGDILIFMN
GEREIRDTADALRKLNLRDTEVLPLYARLSNAEQNKVFQPHAGRRIVLATNVAETSLTVP
GIRYVIDPGTARISRYSWRTKVQRLPIEPVSQASANQRKGRCGRVADGICIRLYSEEDFN
GRPAFTDPEILRTNLASVILQMLALGLGNMEAFPFVEPPESRHIKDGLTLLKELEAVREL
PATGDREAKLQLTEIGRQLSRIPLDPRLAKMVISAAQTGCLSEVMVITAALSIQDPRERP
MEKKQAADEQHRRFEDKESDFLAFVNLWNYLKEQQDALGSNPFRRMCQKEFLSYLRVREW
QDIHFQLRQTVKELGFKANQEPADFKTVHCALLTGLLSHIGNKDLEKPEFLGARNGRFHL
FPASGLFKKPPKWVMAAELVETSRLYARINARIEPEWVEPLAGHLIKLHHSDPHWSKKNG
AVMAKEKVTLYGLTLVAERTINFSRIDPALCRELFIRRALVEGDFETRHRFFSDNRKLLA
EVEALEHKSRRRDILVDDEDLFRFYDARLPEDVISARHFDKWWKEAQKQDAELLNFEKEM
LMKGDAAHISDLDYPNFWQQGRLKLKLTYQFEPGEAADGVTLHIPLPLLNQVEVKGFEWL
IPGLRHELLVALIKSMPKPMRKNFVPAPNYADALLASINPEQGPLLDEMERQLRRMTGVA
VPRESWDWTAVPDHLKLTFRVVDDKHKKVAEGKDLEALKESLRGKVQETLSQVADDDIEQ
SGLTLWSFGELPKEYSQKRSGFEVKAYPALVDQKDSVAIQLVESPVVQQQLMWAGQRRLV
LLNVPSPIKYLQEKLPNKAKLGLYFNPFGKVAELIDDCIACGCDKLIEQHGGMAWDDAGF
EALKEYVRAELNDAVVEVAKQVEAVLTLSHEIKKRLKGKMQLDTAFAMSDIQQQLGNLIH
KGFVTETGWQRLPDLLRYLRAIERRLEKLAIDPNRDRVYMLKVHSVESEYKALLAKIPKS
QLVPTEVANIRWMIEELRVSFFAQNLGTPYPVSDKRVLNAIAQC
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
ttgtctctctctatcgaggcgctgcgccgccgtctatctgcctgcatgaacctcgacgcc
cgccgtctctccagccgtctgtacggggtcaagaagctgccggaagccaagcaggccgcc
gtgctcgagaccattgccgccgacctggatgtagccgaggcgcgctatcaatcccgtctg
gccggtgtgcccagggtcacctatccggacaacctgccggtcagccagaagcaggcggag
atcgccaaagccattgaagagcatcaagtggtgatcatcgccggcgaaaccggctcgggc
aaaaccacccagatccccaagatctgcctggcgctggggcgcggggtgaagggctttatc
ggccacacccagccgcgccgtctggcggcccgtaccgtggcggcccgtatcgccgaggag
atggagtccgagcttggccactacgtgggttacaaggtgcgctttaccgatcaggtgagc
gagcagacccacatcaagctgatgaccgacggtatcctgctggcggagatccagaacgac
cggatgctcacccagtacgacaccatcatcatcgatgaggcccacgagcgcagcctcaac
atcgacttcatcctgggttacttgaagcaactgctgccgaggcgccccgatctgaaggtc
atcatcacctcggccaccatagacccgcagcgtttctcccgccacttcaacaaggcgccg
gtgatcgaggtgtctggccgcacctacccggttgaggtgcgctaccgcccgctgtttgtt
gataaaaaaagcagtgacaagagcgaagggctggaggagcgcgacgagctgcaggggatc
ttcgatgccgtcgaagagctggcccgcgaagggctgggggacatcctcatcttcatgaac
ggcgagcgggagatccgcgataccgccgatgccctgcgcaagctcaacttgcgcgacacc
gaggtactgccgctctacgctcgcctctccaacgccgagcagaacaaggtgttccagccc
cacgccgggcggcgcatcgtgctcgccaccaacgtggcggagacctctctcaccgtgccg
ggcattcgttacgtgatcgatccgggtacagcccgtatcagccgctactcctggcgtacc
aaggtacaacgcctgcccatcgagccagtctcccaggccagcgccaaccagcgtaaaggg
cgctgcggccgggtggcggacggtatctgtatccgcctctactccgaggaggatttcaac
ggccgtccggcctttaccgaccccgagatcctgcgcaccaacctggcttccgtcatcctg
cagatgctggcgctcggccttggcaacatggaggcgttccccttcgtcgagccgccggag
tcacgccatatcaaggatggcctgaccctcttgaaagagctggaggcggtgcgcgagctg
ccagccaccggcgatcgcgaagccaagctgcagctgaccgaaattggtcgccagctttcg
cgcatcccccttgatccgcgcctggcgaagatggtgatcagcgccgcgcagaccggctgt
ttgagcgaggtgatggtgatcaccgccgccctcagcattcaggatccccgcgagcggccc
atggagaagaagcaggccgccgacgagcagcacagacgctttgaagacaaggagtccgat
ttcctcgccttcgtgaacctgtggaactacctgaaagagcagcaggatgcccttggtagc
aacccgttccggcgcatgtgccagaaggagtttctctcctacctgcgggtgcgcgagtgg
caggacattcacttccaattgcgtcagacggtcaaagagctgggttttaaagccaaccag
gagccggcggatttcaagacggtgcactgcgccctgctgaccggcctcttgagtcacatt
ggcaacaaggatctggagaagccggagtttctcggggcccgcaacggccgtttccacctg
ttcccggcctcgggcctgttcaagaaaccgcccaagtgggtgatggccgcagaattggtg
gagacctcccgcctctacgcccgcatcaacgccaggattgaacccgagtgggtggagccg
ctggcgggccacctcatcaagctgcaccacagcgacccccactggtcgaagaagaacggc
gccgtcatggccaaggagaaggtgaccctctatggcctgaccctggttgccgagcgcacc
atcaacttcagccgcatcgatccggccctgtgccgcgagctgtttatccgccgcgccctg
gtggagggggatttcgagacccgccaccgcttcttcagcgataaccgcaagctgctggcg
gaggtggaggcgctggagcacaagtcgcgccgtcgcgacatcctggtggatgacgaggat
ctgttccgcttctacgacgcccgcctaccggaggatgtgatctccgcccgtcatttcgac
aagtggtggaaggaggcgcagaagcaggacgccgagctgctcaacttcgaaaaagagatg
ctgatgaagggggatgcggcccacatcagcgatctcgactaccccaacttctggcagcag
gggcgcctcaagctcaaactgacttaccagttcgaaccgggggaggccgccgatggcgtg
accctgcacatcccgctgccgctcctgaatcaggtggaggtgaaagggttcgagtggttg
atcccggggctgcgtcacgagctcttggtggcccttatcaagtcgatgccaaagccgatg
cgcaagaacttcgtaccagcgcccaactatgccgatgcgctgctcgccagcatcaacccc
gagcaggggccgctgctggatgagatggagcgccagctgcggcgcatgaccggcgtggcc
gtacctcgcgaatcctgggattggaccgcggtgcccgatcacctgaaactcaccttccgg
gtggtggacgacaaacacaagaaggtggcggaaggcaaagacctggaggcattgaaagag
tccctgcgcggcaaggtgcaggagacgctatcgcaagtggcggacgacgatatcgagcag
tcaggcctcaccctctggagctttggcgagctgccgaaggagtacagccaaaagcgtagc
ggtttcgaggtgaaggcctatccggcgttggtggatcagaaggattcggtcgccatccag
ctggtggagagcccggtggtgcaacagcagctgatgtgggccggtcagcgccggctggtg
ctgctcaatgtgccatctcccatcaagtacctgcaggagaagctgcccaacaaggccaag
cttgggctctacttcaatccctttggcaaggtggcggagcttatcgatgactgcatcgcc
tgcggctgcgacaagctcatcgagcagcacggcggcatggcctgggacgatgccggcttc
gaggcgctcaaggagtatgtccgcgccgagctcaacgatgcggtggtagaggtggccaaa
caggtggaagccgtgttgacgctgtcccatgagatcaagaagcggctcaagggcaagatg
cagctcgacaccgcctttgccatgtccgacatccagcagcagctcggcaacctcatccac
aagggctttgtcaccgagaccggctggcagcggctgccggatctcttgcgctacctgcgt
gccatcgagcgacgtctggagaagctcgctatcgatcccaaccgggatcgggtctacatg
ctcaaggtgcacagcgtggagtcggaatacaaggcgctgctggccaagatccccaaatcc
cagctggtgcccaccgaggtggccaacatccgctggatgatcgaggagctgcgggtgtcg
ttctttgcccagaatctggggaccccctatccggtctccgataaacgggtgctaaacgcc
atcgcccagtgctaa
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