Aeromonas hydrophila YL17: AI20_08220
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Entry
AI20_08220 CDS
T03186
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ahd
Aeromonas hydrophila YL17
Pathway
ahd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ahd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AI20_08220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ahd03019
]
AI20_08220
03009 Ribosome biogenesis [BR:
ahd03009
]
AI20_08220
Enzymes [BR:
ahd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AI20_08220
Messenger RNA biogenesis [BR:
ahd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AI20_08220
Ribosome biogenesis [BR:
ahd03009
]
Prokaryotic type
rRNA processing factors
AI20_08220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AHV35173
LinkDB
All DBs
Position
3538542..3541703
Genome browser
AA seq
1053 aa
AA seq
DB search
MKRMLINATQEEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIARNYFPSGYSYQGRPNIKEVVREGQEVIVQIDKEERGTKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSGLTVPDGMGLIVRTAGVGKSPEEL
EWDLNVLLNHWDSIHKASQSRSAPVLIHQESNVIVRAIRDYLRRDVGEILIDNPVIFERA
KSHIELVRPDFLNRVKLYKGEVALFNHFQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSRATKGGDIEETALQTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVEN
RLREAVHQDRARIQLGRISRFGLLEMSRQRLRPSLNESSSHICPRCQGQGVIRDNESLAL
SILRLIEEEAMKDNTEQVHAQVPVDVAAYLLNEKRSSIASLEQRNDVRVYIIPNQHLETP
HYEVTRIRQNEIPEAASYELKTEIAKPVYQPKQAQTIEREQPLLQGFVQAPQPAAPAAPA
PVATPVAEEPGLFGKLFKSLSNLFGGNADSAEVTAPAEKPATREARKEDGHRHQRDESRS
RGQRGRRDDNRSSRNGDAGEKREGVASRENGEGRNRRPRKEREPRQEREARGEVREQRME
REPREAREPRQEREPRAPRQAREPRAPREPRAEVVVDTLDSVEAVATNVEQRQEKEQKVA
ERRERRQLRKQIRVDAPADDAAVAHAADVAPVATVDAVDATEQQDEQAEGQRRSRRTPRN
QRIEGQRRKRINEEARSQRDDEEQTAEVAAPTLTAAAQADAAQVKVEEPAVPVITIPSAE
AVAAALQASSALTEHVVAEAVAEEAREQAEAVAEEAREQAEAVVAAEPVATVVETAPVVA
EPVIAAVEAAPVAVETVAEAVVEPVQAVETPVVETKPVVEATVETAPAVADVVAAPAVEP
VAAVAEPVVAAETAKVEPATAAPAAKQVKRGGSLLAGARKASAPMATPAAAPALPAREPV
EYAPLVRSEVATSGRHGGSTAAVNVATSPAGRP
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaatcaacgcgactcaggaagaagagttgcgcgtagcgctggttgac
ggacaacagctctacgatctggatattgaaagtccgggacacgagcagaagaaagcgaac
atttacaagggcaaaatcacccgcgtagaacccagtctcgaagctgcttttgtcgactat
ggcgccgagcgccacggtttcctgccgttaaaggaaatcgcccgcaattacttcccctcc
ggttactcctatcagggtcgtccaaacatcaaagaagtggtccgcgaaggccaggaagtc
atcgtccagatcgacaaggaagagcgtggcaccaagggtgcagccctcaccaccttcatc
agtctggccggcagctacttggtgctgatgccgaacaacccccgtgccggcggtatctcc
cgtcgcatcgagggcgatgaacggactgaactgaaagaagccctgagcggcctgaccgtg
ccggacggcatgggcctcatcgtgcgtaccgccggtgtgggcaagtccccggaagagctg
gaatgggatctgaacgttctgctcaaccactgggactccatccacaaggcgtcacagagc
cgctccgcgccggtgctgatccatcaggaaagcaacgtcatcgtgcgtgccatccgtgat
tacctgcgccgcgatgtgggcgagatcctgatcgacaacccggtcattttcgaacgcgcc
aagtcgcacatcgagctggtacgtcccgatttcctcaaccgcgtgaagctgtacaagggt
gaagttgccctgttcaaccacttccagattgagagccagatcgagtctgccttccagcgt
gaagtgcgcctgccctccggcggcagcatcgtgatcgatccgactgaagcgctgacctcc
atcgatatcaactcttcccgcgccaccaagggcggcgatatcgaagagactgcgctgcag
accaacctggaagcggccgacgagattgcccgtcaattgcgtctgcgtgacctgggtggt
ctgattgtcatcgacttcatcgacatgacgccggttcgccatcaacgcgaagtggaaaac
cgtctgcgtgaagccgtgcatcaggaccgtgcccgcatccagctcggccggatctcccgt
ttcggtctgttggagatgtctcgccagcgtctgcgtccctccctcaacgagtccagcagc
catatctgcccccgttgccagggtcagggcgtgatccgtgacaacgaatcactggccctg
tccatcctgcgtctcatcgaagaagaggccatgaaggacaacaccgagcaggtgcatgct
caggtgccggtcgatgtcgccgcctatctgctcaacgagaagcgcagctccatcgccagc
ctggaacaacgcaatgatgtgcgtgtctacatcattccgaaccagcacctggaaaccccg
cactacgaagtgacccgcatccgtcagaacgagatcccggaagcggccagttacgagctg
aaaaccgaaattgccaagccggtctaccagcccaaacaggcccagaccatcgagcgcgag
cagcccctgctgcaaggcttcgtccaggcaccgcaaccggctgcgccggcggcccccgcc
cctgttgcaaccccggttgctgaagagccgggcctgttcggcaagctgttcaagagcctc
tccaacctgttcggcggcaatgctgacagcgccgaagtcaccgcgcctgccgagaaaccg
gcaacgcgcgaggctcgcaaagaggacggtcaccgtcatcagcgcgatgaatcacgcagc
cgtggtcaacgtggtcgtcgtgacgacaaccgcagcagccgcaacggcgatgccggcgag
aagcgcgaaggcgtggccagccgcgagaacggcgaaggccgcaaccgtcgcccgcgcaaa
gagcgtgagccgcgtcaggaacgtgaagcccgtggtgaggtgcgcgaacagcgcatggaa
cgtgaacctcgcgaggctcgtgagccgcgtcaggagcgcgaaccccgtgccccacgtcag
gctcgtgagccccgcgctccgcgtgaaccgcgtgccgaggtagtggttgacacactggac
agcgtagaagccgttgccaccaacgtggaacagcgtcaggaaaaagagcagaaagtggcc
gagcgccgcgaacgccgccaactgcgcaagcagatccgcgtcgatgcgcctgccgatgac
gccgctgttgcccacgctgccgatgtagcgccggttgccaccgtcgatgccgttgacgca
actgaacagcaggatgagcaggcagaaggccagcgtcgttcccgccgtactccgcgtaat
cagcgtatcgaaggccaacgccgcaagcgcatcaacgaagaagctcgcagccagcgtgac
gatgaagagcagactgccgaagtcgctgcaccgactctgactgctgccgcgcaagccgat
gcagcccaggtcaaagtggaagaaccggctgtgcccgtgatcaccatcccgagcgctgaa
gccgttgctgctgccctgcaggcctcctccgccctgaccgagcacgtggttgccgaggcc
gtcgccgaagaagcccgcgagcaggccgaagccgtcgccgaagaagcccgcgagcaggcc
gaagccgttgtcgccgctgaaccggtagcaaccgtcgtcgaaaccgcccccgtggtggcc
gaaccggtcattgctgctgttgaagccgcgcctgttgcagtggaaaccgtggcagaggct
gtcgttgagcccgtacaggctgttgagactccggttgtcgagaccaagccggttgtggaa
gcgaccgtcgaaaccgccccggcagttgcagacgtcgttgccgcaccggccgttgaaccg
gttgccgctgtggccgagcctgttgtcgctgcagagactgccaaggttgaacccgcaacc
gcagccccggctgccaagcaggtcaagcgcggtggcagcctgctggctggtgcccgcaag
gcctctgccccgatggcaactccggccgccgcccctgccctgccggcacgcgagccggtc
gagtatgcacccttggtgcgcagcgaagtggccacttccggccgccatggtggcagtact
gccgccgtcaacgtcgctaccagcccggccggtcgtccctga
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