Aeromonas hydrophila YL17: AI20_20905
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Entry
AI20_20905 CDS
T03186
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ahd
Aeromonas hydrophila YL17
Pathway
ahd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ahd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AI20_20905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ahd03021
]
AI20_20905
03400 DNA repair and recombination proteins [BR:
ahd03400
]
AI20_20905
Enzymes [BR:
ahd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AI20_20905
Transcription machinery [BR:
ahd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AI20_20905
DNA repair and recombination proteins [BR:
ahd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AI20_20905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AHV37527
LinkDB
All DBs
Position
complement(798837..803141)
Genome browser
AA seq
1434 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDSIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVIEPGMTNLERSQMLSEEQYLDALEEWGDEFDAKM
GAEAILALLRAIDLEGEVRTMREELDQTNSETKRKKTTKRLKLMEAFLQSGNKPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPASGEPIIVPSQDVVLGLYYMTRARIAAKGEGMVLSGPKEAEKVYRAG
LADLHARVKCRITEYVKNEAGELVAKTEMKNTTVGRAILSLILPKGMEYALIDEPKVLTA
AEQADLDANPQNWIKCVSNKALGKKLISRLLNTCYRKQGLKDTVIFADQLMYTGFHYAAL
SGASVGIDDMVIPDAKKDIIASAEAEVAEIQDQFLSGLVTAGERYNKVIDIWASANERVS
KAMMENLSKERNVNSLGEEEEQASFNSIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSI
IETPIVANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDMVITEDDC
GTTEGLWMTPLIEGGDVVEPLRERVLGRVVADDVIKPGTEDEVLVARNTLLDEQLCDLLE
RNSVDRVKVRSAITCETDFGNCAHCYGRDLARGHLVNKGEAVGVIAAQSIGEPGTQLTMR
TFHIGGAASRAAAESSIQVKNTGSIKLQNAKFVHNSDDKLVITSRSTELTIMDEMGRTKE
SHKLPYGAVLEVKDGQAVSAGETVANWDPHTHPIITEVAGRLHFEHMIDGVTITRQTDEL
TGLSSIVVLDVNERPSAGKEMRPTVKLVDLNGKDVMIPGTDVAAQYFLPGKAIVNLEDGA
NVGVGDAVARIPQESGGTKDITGGLPRVADLFEARQPKEPAILAEISGTISFGKETKGKR
RLVITPTDGGDVYEEMIPKWRNLNVFEGEKVEKGEVLADGPESAHDILRLRGISPVANYI
ANEVQDVYRLQGVKINDKHIEVIVRQMLRKCEILTAGDTDLIEGEQVEVARVKIANRKLV
AEGKTPATYRHILMGITKASLSTESFISAASFQETTRVLTEAAVGGKRDELRGLKENVIV
GRLIPAGTGFAYHHSRINQRAAAARAVAAPQVTADEAQQNLADLLNAAGSFDEE
NT seq
4305 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttactcaagtttttgaaggctcagaccaagaccgaagagtttgacagtatc
aagatcggtctggcctctcctgacatgatccgctcctggtcattcggtgaggtcaaaaag
cctgagaccatcaactaccggactttcaagccggagcgtgatggtctgttctgcgcccgt
atcttcggaccggtgaaggactacgagtgtctgtgcggcaagtacaagcgcctgaaacac
cgtggtgtgatctgtgagaagtgcggcgtagaagtgacccagaccaaggtccgtcgtgag
cgtatgggccacatcgagctggccagcccgactgcccacatctggttcctgaagtccctg
ccgtcccgtatcggcctgctgctggacatgaccctgcgtgacatcgagcgcgtgctgtat
ttcgaatcctatgtagtgatcgaacctggcatgaccaacctcgagcgcagccagatgctg
tccgaagagcagtacctggacgcactggaagagtggggcgacgaattcgacgccaagatg
ggtgccgaagcaatcctggcattgctgcgcgccatcgatctggaaggcgaagtgcgcacc
atgcgcgaagagctggatcagaccaactccgagaccaagcgcaagaagaccaccaagcgt
ctgaagctgatggaagccttcctgcagtccggcaacaagccggagtggatgatcatgaca
gtgctgcctgtgctgccgccggacctgcgtccgctggtaccgctggacggcggccgtttc
gcgacctccgatctgaacgatctgtaccgccgcgtgatcaaccgtaacaaccgtctgaag
cgtctgctggatctggctgcaccggacatcatcgtgcgcaacgaaaagcgcatgctgcaa
gagtccgtggatgccctgctggacaacggtcgtcgtggccgtgccatcaccggctccaac
aagcgcccgctgaaatccctggccgacatgatcaagggtaagcaaggtcgtttccgtcag
aacctgctcggtaagcgtgtcgactactccggtcgttccgttatcaccgtaggtccgacc
ctgcgcctgcatcagtgcggtctgccgaagaagatggcgctggaactgttcaagcccttc
atctatggcaagctggaaactcgcggtctggcgaccaccatcaaggccgccaagaagatg
gttgagcgcgaagaagctgttgtctgggacatcctggacgaagtgatccgtgaacacccg
gtcctgctgaaccgtgcaccgactctgcaccgtctgggtatccaggcgttcgagccgacc
ctgatcgaaggcaaggccatccagctgcacccgctcgtctgtgccgcctataacgcggac
ttcgacggtgaccagatggcggtccacgtaccgctgaccctggaagcccagctggaagcg
cgcgcgctgatgatgtccaccaacaacatcctgtcgcctgcctccggtgagccgatcatc
gttccgtctcaggacgtggtcttgggtctgtactacatgacccgtgcccgtatcgccgcc
aagggcgaaggtatggtgctgtccggtccgaaagaggccgagaaggtttaccgtgccggc
ctggccgacctgcatgcgcgcgtcaagtgccgcatcaccgagtacgtgaagaacgaagcc
ggtgaactggttgccaagaccgagatgaagaacaccaccgttggtcgtgcgatcctgagc
ctgatcctgccgaaaggcatggaatacgccctgatcgacgaaccgaaggtgctgactgcc
gccgaacaggctgatctggatgccaacccgcagaactggatcaagtgcgtctccaacaag
gcgctgggcaagaagctgatctctcgtctgctgaacacctgctatcgcaagcagggcctg
aaggacaccgttatcttcgctgaccagctgatgtataccggtttccactacgcggccctg
tccggtgcgtccgttggtatcgatgacatggtcatcccggatgccaagaaggacatcatc
gcttctgccgaagccgaagttgccgagatccaggaccagttcctgtccggtctggtgacc
gcgggcgaacgttacaacaaggttatcgatatctgggccagcgccaacgagcgtgtctcc
aaggccatgatggagaacttgtccaaagagcgtaacgtcaactcgctgggtgaagaagaa
gagcaggcatcgttcaacagcatcttcatgatggccgactccggtgcgcggggttccgca
gcccagattcgtcagctggccggtatgcgtggcctgatggccaagccggatggctccatc
atcgagaccccgatcgtcgcgaacttccgcgaaggtctgaacgtactgcagtacttcatc
tccactcacggtgctcgtaagggtctggcggataccgcactgaagactgcgaactccggt
tacctgactcgtcgtctggtagacgtggcacaggacatggtgatcaccgaggacgattgc
ggcactaccgaaggtctgtggatgactccgctgatcgagggtggcgacgtggtcgagccg
ctgcgtgagcgcgtactgggccgtgtggttgccgatgacgtgatcaagccgggtaccgaa
gacgaagtgctggtagcacgcaacaccctgctcgacgagcagctgtgtgacctgctggag
cgcaactccgtcgaccgcgtgaaggtacgttctgccatcacctgtgagaccgacttcggt
aactgtgctcactgctacggccgtgatctggcccgtggtcacctggttaacaagggtgag
gctgtcggtgttatcgccgcccagtccatcggtgaaccgggtacccagctgacgatgcgt
accttccacatcggtggtgccgcatcccgtgccgctgccgagagcagcatccaggtcaag
aacaccggtagcatcaagctgcagaacgccaagttcgttcacaacagcgacgacaaactg
gttatcacctctcgttctaccgaactgaccatcatggacgagatgggccgtaccaaggaa
agccacaagctgccttacggtgccgtgctggaagtgaaggatggccaggccgtgagcgcc
ggtgaaaccgtcgccaactgggatccgcacactcacccgatcatcaccgaagtggcgggt
cgcctgcacttcgaacacatgatcgacggcgtgaccattactcgtcagaccgacgagctg
accggtctctcctccatcgtcgtgctggatgtcaacgagcgtccgagcgccggtaaagag
atgcgtccgaccgtgaaactggtcgacctgaacggcaaggatgtgatgatcccgggtacc
gatgtagccgcccagtacttcctgccgggcaaggcgatcgtgaacctggaagatggtgcc
aacgtgggcgtgggtgacgcggtagcgcgtatcccgcaagagtccggcggtaccaaggac
atcaccggtggtctgccgcgcgttgcggatctgttcgaagcacgtcaaccgaaagagccg
gccatcctggccgagatctccggtaccatctccttcgggaaagagaccaagggcaaacgc
cgtctggtcatcaccccgaccgatggtggcgacgtctacgaggagatgattccgaagtgg
cgtaacctgaacgtgttcgaaggtgaaaaagttgagaagggtgaagtgctggcggacggt
cctgagtctgctcacgatatcctgcgtctgcgcggtatcagcccggtcgccaactacatc
gccaacgaagtacaggacgtttaccgtctgcaaggcgttaagatcaacgacaagcacatc
gaagtcatcgttcgtcagatgctgcgcaagtgcgagatcctgactgctggcgacaccgac
ctgatcgaaggcgaacaggttgaagtggctcgcgtgaagattgccaaccgtaagctggtt
gctgagggcaagaccccggccacctaccgtcacatcctgatgggtattaccaaggcatct
ctgagcaccgagtccttcatctccgcggcttccttccaggaaaccacccgcgttctgacc
gaagctgccgttggcggcaagcgcgacgaactgcgtggcctgaaagagaacgtgatcgta
ggtcgtctgatcccggctggtaccggctttgcctaccaccacagccggatcaaccagcgt
gccgcagccgctcgtgccgttgccgcaccgcaggtgactgccgacgaagctcagcaaaac
ctggcggatctgctcaacgcagccggcagctttgacgaagagtaa
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