Aureliella helgolandensis: Q31a_10340
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Entry
Q31a_10340 CDS
T06948
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ahel
Aureliella helgolandensis
Brite
KEGG Orthology (KO) [BR:
ahel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ahel03016
]
Q31a_10340 (rtcB)
Enzymes [BR:
ahel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Q31a_10340 (rtcB)
Transfer RNA biogenesis [BR:
ahel03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Q31a_10340 (rtcB)
Prokaryotic type
tRNA splicing ligases
Q31a_10340 (rtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QDV22748
UniProt:
A0A518G2C5
LinkDB
All DBs
Position
1349024..1350517
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AA seq
497 aa
AA seq
DB search
MSASEAIIATGEATGILPTGASRTPITVIGTQAIRETFDDLCIQQAINSRNAPGVTQVVL
NPDAHCGYGAPIGCVMVSPSHIYPGPVGVDIKCSMSLLQLDIPAEEIEDRRVRRALIDAI
CERTPTGAGRGARHVAKGRVVDERLGVEALVSGASLSVCQQMGIPPEWAERCEDSAHLAH
DHTADSLAMRLEELRFRNAFPNFCQKIHQLGSYGGGNHFGECEVVELRDREPDTLQAANA
FGLRDGHVAFLSHCGSRGIGHQLAMGQFRELQCKFAEWGIPLPGGDRELVYAPLGSPEAD
AYIDDMSLGANFATVNHLMINALVLEAFQEVLPGCTGSLVYFISHNIARKEIVDHRPAWV
HRKGATRAFPAGHHALADTPFAETGHPILLPGNPQAGSSVMVATQGAEKSCYSVNHGAGR
RLGRKRAIRELDQKAVDQSFDAADILTNCRQYPRDEAPATYKDFEEVLRSVEKADLAREV
ARLRAKFVIKDGSAADD
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcgtccgaagccattatcgcaacaggcgaagccacggggattttgccgaccggc
gcatcgcggacacccatcacggtgatcgggactcaagccattcgcgagaccttcgatgat
ctgtgtattcagcaagcgatcaacagtcgcaatgcaccgggagtcacacaagtcgtattg
aacccagatgcacactgtggttacggtgcgcccattgggtgcgtgatggtctcgccatcg
cacatctacccagggcccgtgggcgtcgatatcaagtgttcgatgagcctcctgcagttg
gatattcccgctgaggagattgaggatcgtcgcgttcgtcgagcgttaatcgatgcaatt
tgcgagcgcacccccacgggggcaggacggggggcacgccacgttgccaagggccgtgtc
gtggacgagcggctaggtgtcgaagcgctggtgtcgggtgcgagcttgtcggtctgtcag
cagatggggattcctcccgaatgggcggagcgctgtgaggattccgcgcacctcgcgcat
gaccataccgcagactcgctcgcgatgcggctcgaagaacttcgctttcgcaatgccttt
ccgaatttttgccagaagatccatcagttgggatcctatggtggtggaaaccactttgga
gagtgcgaggtcgtcgagcttcgagatcgagagccagacacgcttcaggcagccaacgcg
tttggtttgcgagatggccatgtcgccttcctttcccactgtggttcccgtgggattggt
catcagttggcgatggggcagttccgtgaattgcagtgcaagttcgccgagtgggggatt
cccctgccaggcggcgatcgtgaactggtgtatgcgccgttgggttctcctgaagccgat
gcctacattgacgacatgtccttgggagcaaactttgccacggtcaatcatctaatgatc
aacgccttggtcttggaggcgtttcaagaagtgctgccaggctgcacgggaagcttggtc
tacttcatcagtcacaacattgctcgcaaggagattgtcgatcatcggccggcatgggtt
caccgcaagggagcgacgcgcgccttcccagcgggccatcatgcgttggcggacacgccg
tttgcggaaactgggcatcccatcctgttgcccgggaacccgcaagccggctcgagtgtc
atggttgcgacgcaaggggcggagaagagctgttacagtgtgaatcatggtgccggacgt
cgactgggccgcaagcgagccattcgagagttggatcaaaaagcggtggaccagtccttt
gacgcggctgacatcctgacgaactgtcgccagtacccacgagatgaagcccccgctacc
tataaggatttcgaggaggtgttgcgaagtgtggagaaggcggatcttgcccgagaggtc
gctcggctgcgggctaaatttgtgattaaggatgggagtgctgcggatgattga
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