Aureliella helgolandensis: Q31a_59020
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Entry
Q31a_59020 CDS
T06948
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ahel
Aureliella helgolandensis
Pathway
ahel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ahel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q31a_59020 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ahel03019
]
Q31a_59020 (rnr)
03016 Transfer RNA biogenesis [BR:
ahel03016
]
Q31a_59020 (rnr)
Enzymes [BR:
ahel01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Q31a_59020 (rnr)
Messenger RNA biogenesis [BR:
ahel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Q31a_59020 (rnr)
Transfer RNA biogenesis [BR:
ahel03016
]
Prokaryotic type
tRNA degradation factors
Q31a_59020 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
YxiF
Motif
Other DBs
NCBI-ProteinID:
QDV27513
UniProt:
A0A518GFZ3
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All DBs
Position
complement(7583593..7585911)
Genome browser
AA seq
772 aa
AA seq
DB search
MSDSDSPAKIDPALRQQILDLVYHPQYQPTKPKGVHQALGLPPEAFPQVRMAIKRLVQHG
ELAYARNHLVLTPDQISGDPKMTRGTFRQAAAGFGFVRPVTTGKLGTTEDIFIPASATLS
AMDRDLVQVRVRASRKGGGQEGEVVEILERARRQFSGSYAVKDGNSVVWLDGVTIGSPVM
VGDVRGLPLEQGDKVVVELVHFPDGRSVGEGVIIEVLGSSKNPAVDTLAVMRQYGLADEF
PAEVIDQARATADAFVEGDIPADRRDLTGVVTLTIDPFDARDFDDAISLSKNEKGHWELL
VHIADVSHFVPIGSVLDEEARDRGTSVYLPDRVIPMLPELISNHLASLQPNKVRLTKTVL
MEMTEEGTVVHQEVFNSVIHNDQRLNYEQVDQYLENPERWRERLTPEIWQLLRDIHTLAM
VLRQNRKDTGAIELHLPEVKIDLDKAGKVKGARITENTESHQMIEECMLAANQAVATWLD
QLEIPFLRRAHAPPERRKMRKLDDFMRDLGIKCESMENRFEVQRVVELVRGKVTEYAVNY
AILKSMSKAVYQPEEEMHYALQFQHYCHFTSPIRRYPDLQVHRTVDRLIRQTKPYGDPLP
VLIQLGRHCSDKEQNAEWAEREIIKIKLLHFLNKKIGETMPGVISGVVPDGFYVRGIKFP
AEGFVSIQDLPKDSYKFERRGQMLEGFRSGNRFRLGDELVVRIQSVDLARRALLLSVVEK
RGQTVEDRPKRGGGKAQRKEPTKATRNSSSSKGAAKKRASFKGADKSKRRRR
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagattccgactccccagcaaaaattgatccagcgctgcgccagcagattcttgat
ttagtgtaccacccccagtatcagccaaccaaacccaagggggttcatcaggcgctcggc
cttcccccggaagccttcccgcaagtccgcatggcaatcaaacgcctcgttcagcatggg
gaattggcgtatgcccgaaaccatttggttttgacaccggaccaaatttcgggggatccc
aaaatgacgcgaggaacctttcggcaggcggcggcaggtttcggtttcgtccgtccggtc
accactgggaaactggggacaacggaagatattttcattcctgcctcggcgaccctctcg
gccatggaccgcgatctcgtgcaagtgcgtgtgcgggcgagccgcaaagggggggggcag
gaaggcgaggtcgtggagatcctcgagcgggcccggcggcagttttcgggctcctacgct
gttaaggatggcaactctgttgtgtggctcgatggtgttacgatcggttcgccagtgatg
gtgggggacgttcgtggattaccgctggagcagggagacaaagtcgttgtcgaactggtg
cactttcccgatggccgcagtgtcggggagggggtcatcatcgaggtcttgggctcgagc
aaaaaccccgccgtcgataccctggccgtcatgcgccagtatgggctcgccgacgaattc
cctgccgaggtgattgatcaagctcgtgccaccgccgatgccttcgttgaaggggatatc
ccggccgatcgacgcgatctgaccggtgtggttaccctaaccatcgatccctttgacgcg
cgcgatttcgacgatgcgatttccctcagtaagaacgaaaaggggcactgggaattgttg
gtgcacatcgccgatgtatcgcatttcgttcccataggctccgtcctcgatgaagaggct
cgcgaccgaggcaccagcgtctacttgcctgatcgcgtcattcccatgctgccagaattg
attagcaaccatttggccagcttgcagccaaataaagttcgcttgaccaagacggtgttg
atggaaatgaccgaagaggggaccgtcgtccaccaggaagtctttaattcggtaatccat
aacgatcaacggttgaattacgagcaggtggatcagtatctcgagaatcccgagcgctgg
cgcgagcgactaactcctgagatttggcaactgttgagagacatacacaccttggcaatg
gtgctgaggcaaaaccgcaaagacaccggtgccatcgagttgcacttgccggaagtgaag
attgacttagataaagcggggaaggttaagggggctcggatcacggagaacaccgagagt
caccagatgatcgaagagtgcatgctggcagccaaccaggccgtggcaacctggctcgat
cagttggaaattcccttcctgcgccgggcgcacgcgccacccgaacgtcgcaaaatgcgc
aagctagacgacttcatgcgcgatttggggatcaaatgcgaaagcatggagaatcgcttt
gaagtgcagcgcgttgtagaattggtccgcgggaaagtgactgagtatgcggtcaactac
gccattctaaaatcgatgagcaaagccgtttaccagcccgaagaggagatgcactacgct
ctacagtttcagcactattgtcatttcacgagtcccattcggcggtaccccgacttgcaa
gtgcaccgaacagtggaccggttgattcggcagacgaaaccgtatggagaccctctaccg
gttttgattcagttgggtcgtcactgcagtgacaaggaacagaacgccgagtgggcggaa
cgcgagatcattaagatcaagctgttgcacttcctcaacaagaagattggtgaaacgatg
ccgggagtgattagcggcgtcgttcccgatgggttctacgttcgcgggattaagtttccg
gcggaagggttcgtgtccattcaggatttacccaaggatagctacaaattcgaacgccgc
ggtcaaatgctcgaaggtttccggagtgggaatcgctttcggctgggcgatgaattggtc
gtgcgaatccaatcggtcgacctagcccggcgggcgctgctgctgtcggtggtcgagaag
cgtggtcagacagtcgaggatcggccgaaacgcggtggaggaaaagcccaacgcaaggag
cctaccaaagcgacgcgcaactcttccagcagcaagggagcagccaaaaaacgcgccagc
ttcaagggagccgacaaaagcaaacgccgtcgtcgctaa
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