Arachis hypogaea (peanut): 112711843
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Entry
112711843 CDS
T07294
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ahf
Arachis hypogaea (peanut)
Pathway
ahf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ahf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112711843
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ahf03021
]
112711843
03019 Messenger RNA biogenesis [BR:
ahf03019
]
112711843
Transcription machinery [BR:
ahf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112711843
Messenger RNA biogenesis [BR:
ahf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
112711843
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
VHS
Motif
Other DBs
NCBI-GeneID:
112711843
NCBI-ProteinID:
XP_025620356
LinkDB
All DBs
Position
9:111298521..111304735
Genome browser
AA seq
972 aa
AA seq
DB search
MYSENLIVSAENPRPFAFQQHLSSSSSTTTSANAKPMSNEIAQKPLPSILVGRFKAMLKQ
RDDELRATAGHVPPPSTEEIVQLYEMLLSELTCNLKAIINDLTFIAEQQREHARGIADAI
CARILEVPAEQKLPSLYLLDSIVKNFGQEYVRYFALRLPEVFCEAYRQVQPHLHPAMRHL
FGTWSKVFPPSVLRKIEAELQLSQVVNNSQSSNMNPLRASESPRPSHGIHVNPKYLRQLE
RSTVDSVGGEKFDIAGKASNTNFGIVANKTNQFVSSRLGISSSPSRAGLDRPLSVADEYA
VDSSSGRMVERESPHNYGVPRVVGREEELGEWQRKQYPGDVRNRFQTPLTYSLSNGHPRQ
SPRALIDAYGSDKSQETSSTKPLILDRLDRNGIDNKVTSWQNTEEEEFDWEDMSPTLVDH
SRNNGFLQSTAFSRDKPVAVAANAILSEQDTRKGWSGGSQLPPVDDSSVIAADAFPHSVY
GRVSMGQVSGFQNQINQSLGSRPPHDAWKVSQSQTMLNIRGRGRTLLMPPIDNNPNNDVN
PYGIRPAVSRMVSGIASNVEPRPPVLPGSFEIRPSVTVHGTRPPTLNPIFPPQKHVRSQF
DAINTSNPIMNHGPNKSLFMPEQPGLDTVENRDASKGKIHQLPNQLAGLLPSNLQNLGQT
PQHFFPSRDPSSSQFGHGNSLQGHGPSLSAAMSNPLPITQFPLPVQGIANNSLQLQGGVH
PPLPPGRPPAPSQMIPHPNAGPYVSNQQPAVAYTNLISSLMSQGVISLANQPSGQDSVGT
EFNPDILKIRHESAISALYGDLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKSRKQKP
SRKWFVSDRMWLSGAEALGTESVPGFLPTETVEEKKDDEELAVPAEEDQNTCALCGEPFD
EFYSDEMEEWMYRGAVYLNAPTGATVGMDRSQLGPIIHAKCRSDTNTSPSEDFALDEGGA
NEEGGQRKRMRS
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgtactctgaaaatctgatagtgtccgctgaaaaccctagacccttcgcgtttcagcaa
catctatcttcttcctcgtctactactacttcggccaacgcgaaacccatgagcaatgag
atcgcacagaagcctctcccttccattctcgttggcaggttcaaggctatgctcaagcag
cgcgacgacgagctcagagccaccgccggtcacgtgccgcctccgtctacggaagaaatc
gttcagctgtacgagatgctgctgtcggagctcacgtgcaatctgaaggccattatcaac
gatctcaccttcatcgctgagcagcagagggagcatgccaggggcatcgccgacgctatc
tgcgctcggattctggaggtgcctgcagagcaaaagcttccttcactctatcttttggac
agtatagtgaagaactttggacaggaatatgttagatactttgcattacgcctgcccgaa
gttttctgtgaggcatacaggcaggttcaacctcatttgcaccctgctatgcgccatctc
tttggcacctggtcaaaagtctttccaccgtctgtcctacgcaagattgaagctgagttg
caactttctcaagtagttaataatagtcaatcgtccaacatgaatcccctcagagcatct
gaatctcctagaccaagtcatggcatacatgtaaatccaaagtacctgcggcagttggag
cgctcaactgtggatagtgttggtggtgaaaagtttgacatagcaggaaaggctagtaat
acaaattttggcattgtagctaataagacgaatcaatttgtatctagcagacttggaata
tcctcttctccttcaagagctggtctagataggcctttgtcagtagcagatgagtatgca
gttgacagttcttctggaaggatggttgagagagagtctcctcataattatggagtacca
agagtagtaggtagagaggaagaattgggtgaatggcagcgaaagcagtaccctggtgac
gttcgaaatcgatttcaaactcctttgacatacagccttagtaatgggcatccgcgtcaa
agtccaagagctttaattgatgcgtatggcagtgacaaaagccaagaaacttcaagcacc
aagcctcttatacttgatcggctagatagaaatggtatcgacaacaaagtgacatcatgg
cagaatactgaagaggaggagtttgattgggaagatatgagtccaacattagtagaccat
agtaggaataatggcttcttgcaatcaactgctttttccagggataagcctgttgcagta
gcagctaatgcaattttgtcagagcaagatacaaggaagggttggtctggtgggtctcag
cttcctccagtagatgattcttctgtcatagcagcagatgcatttccccattcagtttat
ggtcgtgtatccatggggcaggtatctggtttccaaaatcaaataaaccagagtctgggt
tcccgtccacctcatgatgcttggaaggtctctcaatcacaaaccatgcttaatattagg
ggccgaggaagaactcttttgatgcctcctattgataacaatcccaataatgatgtaaac
ccctatgggattcgacctgcagtgtcaaggatggtttctggtattgcctctaacgtagag
cctcgtccaccagttttgcctggatcttttgaaataagaccttctgtaactgttcatggc
actcgtcctcccaccttaaatccaatatttccaccgcaaaaacatgttagaagtcaattt
gatgcaataaataccagtaatcccattatgaatcatggcccaaataaatctctgttcatg
cctgaacagccagggctggacactgttgaaaacagggatgccagtaaaggaaagatacat
cagttgcctaatcagctggctggattgcttccatccaacctgcaaaaccttggacaaaca
ccacaacattttttcccatctcgggatccatcatcctcacaatttggtcatgggaactct
ctgcaaggacatggtccttctttaagcgcagctatgtcaaatccattacctattacacag
tttcctttaccagtccaaggtattgcaaataattccttacaattacaggggggagtccat
ccacctttacctccaggtcgccctcctgctccttctcaaatgataccacatccaaacgct
ggtccatatgtatcaaaccaacagccggctgttgcatatactaatttaattagttcgctt
atgtcccaaggcgtaatctcattggctaatcaaccctctggacaggattctgttggaact
gagtttaatccagatattctgaagattcgtcatgagtctgcaatcagtgccttgtatgga
gatctccctagacaatgcacgacttgtggactaagattcaaatgccaagaggagcacagt
agtcatatggattggcatgtaacaaagaacaggatgtccaaaagtcgcaaacagaagcct
tctcgtaagtggtttgtgagtgacaggatgtggcttagtggtgcggaggcactgggaaca
gaatcggttccgggttttctgccaactgagaccgtagaagaaaaaaaagatgatgaagag
ttggcagtgccagctgaagaggaccagaatacatgtgcattatgtggtgagcctttcgat
gagttttacagtgacgaaatggaggaatggatgtatagaggagctgtatacctcaatgca
cccaccggagcaacagtgggcatggacaggtcgcagttaggtcccattattcatgccaaa
tgcagatcagacactaatacgtccccctctgaagatttcgcgttggatgaagggggtgcc
aatgaagagggcggccaaagaaaacgaatgcggagttga
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