Arachis hypogaea (peanut): 112741445
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Entry
112741445 CDS
T07294
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
ahf
Arachis hypogaea (peanut)
Pathway
ahf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ahf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112741445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ahf03021
]
112741445
03019 Messenger RNA biogenesis [BR:
ahf03019
]
112741445
Transcription machinery [BR:
ahf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112741445
Messenger RNA biogenesis [BR:
ahf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
112741445
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
zf-CCCH_12
zf-CCCH_3
CR_prot_dom_plant
Torus
Motif
Other DBs
NCBI-GeneID:
112741445
NCBI-ProteinID:
XP_025646229
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All DBs
Position
14:10083119..10090607
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AA seq
696 aa
AA seq
DB search
MEDSEGVLSFDFEGGLDAAPPAAATVSAPSAGLLSNQNDPTAAAAAAAVPNGAAAAAPTA
GDPGAAGNVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQ
DCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSAGPPPSVDEVLQKIQHLYSYNYNAS
NKFFQQRGSNYNQQAEKSQFPQGNNSTNQAVAGKPLQAESGNVQQQQVQQAQQPVNQSQV
QNVASGQPNQANKTATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFD
SVENVILIFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELS
FHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISIAAESKREEE
KAKGVNPDNGGENPDIVPFEDNEEEEEEESDEEEESFGHVVGPAVQGRGRGRGMMWPPHM
PLARGARPMPGMPGFNPVMMGDGLSYGPVGPDGFGMPDLFGVGPRGFPPYGPRFSGDFAG
PPAAMMFRGRPSQPGMFPGGGFGMMMNPARPPFMGGMGANPPRASRPVNMPPMFPPPPPP
PQNNNRLVKRDQRINDRNDKFGSGLEQGKNQDMMSQSGGPDEDMQGYKAQQDDQYAVNTF
RNDDSESEDEAPRRSRHGEGKKRRRSLEDANASSNH
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggaggattccgagggagtcctcagcttcgatttcgagggcggcctcgacgctgctccc
cccgctgccgccaccgtctccgcaccctccgccggacttctctccaatcaaaacgatcca
accgcggcggccgctgcagccgcggttcccaatggcgctgccgcagctgcgcccactgct
ggagaccccggagctgccgggaatgtgcccgggaggcggagcttccggcagacagtgtgc
cggcactggctaaggagcttgtgtatgaagggagacgcgtgcgggttcttgcatcagtac
gacaaggcgaggatgccggtgtgccggttctttcggctgtacggtgagtgccgcgagcag
gattgcgtgtacaagcacaccaacgaagatatcaaggagtgtaacatgtacaagttagga
ttttgtcctaatgggcctgattgccgatacagacatgcaaaatctgctggacctccacct
tctgttgatgaggtccttcaaaagatccagcatttatattcttacaactacaatgcatct
aacaagtttttccaacaaaggggttcaaactataatcaacaagctgaaaaatctcaattt
cctcaaggaaataattctacaaaccaagctgttgctggaaaaccattacaagcagagtcg
ggtaatgtccagcagcaacaagttcaacaggctcagcagccagtcaatcaaagccaagtg
caaaatgttgctagtggtcagcccaatcaggcgaataaaactgcaactcctttacctcaa
ggaatatctaggtattttattgttaaaagttgcaatcgtgaaaatttggagttatcagta
caacaaggagtatgggcaacacaaaggagcaacgagtcaaaactaaatgaggcttttgat
tctgtggaaaatgttatactgattttctcagtcaaccgaactcgccatttccagggttgt
gcaaagatgacctccagaattggtggttctgttgctgggggaaactggaaatatgctcat
ggaactgcacattatggacggaatttctctgttaaatggttaaagttatgtgaactgtca
ttccacaaaactcgccatttgaggaatccatacaatgaaaatttaccagtgaagataagt
agagattgtcaggagctggaaccctccatcggtgagcagttggcatccttgctttatctt
gagccagatagtgagcttatggctatctcaattgcagcagagtctaaacgagaagaagag
aaggcaaagggagtgaatccagacaatggaggagagaatccggatattgtcccatttgaa
gacaacgaagaagaggaagaggaagaaagtgatgaagaggaggagagctttggtcatgtt
gttgggccagctgttcaaggcagaggtaggggcagaggcatgatgtggccgcctcacatg
cctcttgcacgcggagccagacctatgcctggaatgccaggttttaacccagtaatgatg
ggtgatggattatcatatgggcctgttggacctgatggcttcggtatgcccgatcttttt
ggtgtgggccctcgtggttttcctccatatggtcctaggttctctggtgattttgcagga
ccccctgcagccatgatgttccgtgggcgaccttcccaacctgggatgtttccaggtggt
ggatttgggatgatgatgaatcctgcacgtcctccctttatgggggggatgggtgcaaat
cctccaagagccagtaggccagttaatatgcctccgatgtttccaccgcctccacctcca
cctcaaaataacaaccgacttgtaaagagggatcaaagaattaatgatcggaatgataaa
tttggttcaggattagagcagggcaagaatcaggatatgatgagtcaaagtggtggacct
gatgaagacatgcaaggatacaaagcacagcaggatgatcagtatgctgtcaacaccttc
aggaacgatgatagtgaaagcgaggatgaggcacctcggcggtcaaggcatggagagggg
aaaaagagaaggcgaagcttagaagatgccaatgcaagctctaatcactag
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