Arachis hypogaea (peanut): 112755942
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Entry
112755942 CDS
T07294
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
ahf
Arachis hypogaea (peanut)
Pathway
ahf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ahf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112755942
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ahf03019
]
112755942
Enzymes [BR:
ahf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
112755942
Messenger RNA biogenesis [BR:
ahf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112755942
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112755942
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
IG_AIR9
PDE12-like_N
Motif
Other DBs
NCBI-GeneID:
112755942
NCBI-ProteinID:
XP_025660078
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Position
6:complement(114544621..114549462)
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AA seq
600 aa
AA seq
DB search
MLSVVRVHLPSDIPIVGCELTPYVLLRRPDRTVTTDDVSEINPLDGHFLRYKWYRVQSDK
KVAVCSIHPSEQATLQCLGCVKAKIPVAKSYHCTPKCFSDAWQHHRVLHDRAASAVNDNG
NEEEELFGRFNNSGSGSSNTTLSASASSASLTNGAAPVYPAAITQRSGGETWFEVGRSKT
YTPTADDIGHVLKFECVVVDAETKLTVGHSSTLLTSRVIPAPSPSPRRMIPVDGMGHLDA
EGRITSSGSFTVLSYNILSDSYASSELYNYCPSWALSWPYRRQNLLREIVGYRADIICLQ
EVQSDHYEEFFAPELDKHGYYGLYKKKTNEVFLGNANTIDGCATFFRRDRFSHVKKYEVE
FNKAAQSLTDAMIPTSQRKTALNRLVKDNVALIVVLEAKVNNQPVDNPGKRQLLCVANTH
VNVHDGLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHSLLAMGKVDPSH
PDLAVDPLTILHPRTKLVHQLPLVSAYSSFARTIGVGYEQHRRRLDSTTNEPLFTNVTRD
FIGSLDYIFYTADSLVVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCCKNRSRR
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgctgagcgtggtgcgagtgcacctcccttccgatattcccatcgtaggatgtgagtta
acaccttatgtgctcctccgccgccctgacaggaccgttaccaccgatgatgtttccgag
atcaaccccttagatggccatttcttgcgttacaagtggtatcgtgtacaaagtgataaa
aaagttgctgtttgtagcatacatccatccgagcaggccacactgcagtgcctaggttgt
gttaaggctaaaatacctgttgccaaaagttaccattgcactccaaagtgtttttcagat
gcatggcagcatcatcgtgtcttacatgaccgtgctgcaagcgcagttaatgacaacgga
aatgaagaggaggagttatttgggcgatttaataattctggttctgggtcttccaatacc
accttatctgcctctgcttcaagtgctagcctgacaaatggagctgcacctgtgtatccg
gcagcaattacacaacgaagtggtggtgaaacgtggtttgaagttggacgttctaagaca
tacacccctactgctgatgacattggtcatgtacttaagttcgagtgtgttgtagttgat
gcagagacaaaacttaccgtggggcattctagcactctactaacatcccgtgtcattcct
gctccttcgcctagtccacgtcgaatgatacctgttgatgggatggggcatttagatgca
gaagggcgtataacatcttcaggatcttttacggttctatcatacaacatattgtctgat
tcatatgcctcaagtgaattatacaattactgcccttcgtgggctctttcgtggccttat
cgcaggcaaaatttgttacgagaaatagttggttaccgtgctgatattatttgtcttcag
gaggttcaaagtgatcattatgaggaattttttgcccctgaactggataaacatggttat
tatggtctttacaagaaaaaaacaaatgaggtattccttggtaatgccaatacaattgat
ggttgtgcgacattttttcgtagagacagattttcacatgtgaaaaaatacgaggttgaa
tttaataaggctgcacagtcattaacagatgcaatgattccaacctctcagaggaaaact
gccttgaatcggctggttaaggataatgttgcactaatagttgtactagaagcaaaggta
aacaatcagcctgttgacaatcctgggaaaagacagcttctttgtgtggcaaatacacat
gtcaatgtgcatgacggtttaaaggatgtcaaactctggcaggtgcatacacttttaaaa
ggattggagaaaatcgctgccagtgcagacattccaatgttggtttgtggagactttaac
tcagttccaggaagtgctcctcattctcttcttgcaatgggaaaggtagatccttcacat
cctgatttagctgttgacccacttactatattgcaccctcgtaccaagttggttcaccaa
ttgccactggtcagtgcatattcatcttttgcaagaacaattggtgttgggtatgagcag
catagacggagattggacagcacaacaaatgaacctttattcaccaatgtcactagagat
tttattggatctctagattacatattctacacagcggattccttggttgtggagtcgttg
ttggagctattggacgaggaaagtttgaggaaggatacagctcttccttcacccgaatgg
tcctcagatcatatagctctgttagctgagttccgctgctgcaaaaatagatctaggcgc
tga
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